miRNA display CGI


Results 41 - 60 of 146 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15673 3' -60.7 NC_004065.1 + 55416 0.67 0.785829
Target:  5'- -cGGCCUGAuGgGCu-GuCCGGGGCGCg -3'
miRNA:   3'- guCCGGGCU-CgCGcuCuGGCUCUGCG- -5'
15673 3' -60.7 NC_004065.1 + 130282 0.67 0.777177
Target:  5'- uCAGGgUgGAGCGCGAGGaggacgaCGAGAgGg -3'
miRNA:   3'- -GUCCgGgCUCGCGCUCUg------GCUCUgCg -5'
15673 3' -60.7 NC_004065.1 + 29923 0.67 0.767529
Target:  5'- gAGGaCCUGGGCguccucuucgccgGCGAGGa-GGGACGCg -3'
miRNA:   3'- gUCC-GGGCUCG-------------CGCUCUggCUCUGCG- -5'
15673 3' -60.7 NC_004065.1 + 40719 0.67 0.758647
Target:  5'- uUAGaGUCCGAGCuCGAGAgCGAgggagauaauaguGACGCc -3'
miRNA:   3'- -GUC-CGGGCUCGcGCUCUgGCU-------------CUGCG- -5'
15673 3' -60.7 NC_004065.1 + 118995 0.67 0.750569
Target:  5'- aAGGCaccCCGAGCcgacuGCGAGACCugccgGAcacGACGCu -3'
miRNA:   3'- gUCCG---GGCUCG-----CGCUCUGG-----CU---CUGCG- -5'
15673 3' -60.7 NC_004065.1 + 130900 0.67 0.79436
Target:  5'- uGGGCaugaCGGGCGUG-GGCUGccuggcggcGGGCGCg -3'
miRNA:   3'- gUCCGg---GCUCGCGCuCUGGC---------UCUGCG- -5'
15673 3' -60.7 NC_004065.1 + 78922 0.67 0.79436
Target:  5'- uCGGGCgCCGcGGCGCc-GGCCGcuGCGCu -3'
miRNA:   3'- -GUCCG-GGC-UCGCGcuCUGGCucUGCG- -5'
15673 3' -60.7 NC_004065.1 + 77082 0.67 0.785829
Target:  5'- cCAGGCCCuguacauCGCGAGcGCCGcGACGg -3'
miRNA:   3'- -GUCCGGGcuc----GCGCUC-UGGCuCUGCg -5'
15673 3' -60.7 NC_004065.1 + 17811 0.67 0.79436
Target:  5'- uCGGaGCCCGAGCaaGGGGaaCGAG-CGCg -3'
miRNA:   3'- -GUC-CGGGCUCGcgCUCUg-GCUCuGCG- -5'
15673 3' -60.7 NC_004065.1 + 92343 0.67 0.763101
Target:  5'- cCGGGCUCGGagcugcuggcgcaacGCGCGGcccuCCGAGcGCGCg -3'
miRNA:   3'- -GUCCGGGCU---------------CGCGCUcu--GGCUC-UGCG- -5'
15673 3' -60.7 NC_004065.1 + 43378 0.67 0.768412
Target:  5'- -cGGCCggcggucuucgCGAGCGCGGaucggcGCCGGGuCGCg -3'
miRNA:   3'- guCCGG-----------GCUCGCGCUc-----UGGCUCuGCG- -5'
15673 3' -60.7 NC_004065.1 + 127076 0.67 0.777177
Target:  5'- aCAGGUCCcucGAGUGgccacCGGGGCCGGGAuccccaccuCGCg -3'
miRNA:   3'- -GUCCGGG---CUCGC-----GCUCUGGCUCU---------GCG- -5'
15673 3' -60.7 NC_004065.1 + 31573 0.67 0.768412
Target:  5'- --cGUCCGAgaugagcuGCGUGAGGuuguCCGAGACGUa -3'
miRNA:   3'- gucCGGGCU--------CGCGCUCU----GGCUCUGCG- -5'
15673 3' -60.7 NC_004065.1 + 125754 0.67 0.768412
Target:  5'- aGGGCCCG-GCGuCGuGuaucGCgGGGugGCa -3'
miRNA:   3'- gUCCGGGCuCGC-GCuC----UGgCUCugCG- -5'
15673 3' -60.7 NC_004065.1 + 59707 0.67 0.768412
Target:  5'- aGGGCgCCGAGCG----GCCGcGGCGCa -3'
miRNA:   3'- gUCCG-GGCUCGCgcucUGGCuCUGCG- -5'
15673 3' -60.7 NC_004065.1 + 99423 0.67 0.75954
Target:  5'- gGGGCCCGAGCGgcaGAcGCCGccucgacaucGCGCg -3'
miRNA:   3'- gUCCGGGCUCGCg--CUcUGGCuc--------UGCG- -5'
15673 3' -60.7 NC_004065.1 + 198553 0.67 0.750569
Target:  5'- cCAGGUCCGcGCGCGgcacGGACCGcuGCa- -3'
miRNA:   3'- -GUCCGGGCuCGCGC----UCUGGCucUGcg -5'
15673 3' -60.7 NC_004065.1 + 143751 0.67 0.79436
Target:  5'- aCAGcauCCCGGGCGaagugGGGAUCcAGACGCa -3'
miRNA:   3'- -GUCc--GGGCUCGCg----CUCUGGcUCUGCG- -5'
15673 3' -60.7 NC_004065.1 + 113653 0.67 0.785829
Target:  5'- -uGGCCaCGAcGuCGCGAGggaGCCGcAGGCGUu -3'
miRNA:   3'- guCCGG-GCU-C-GCGCUC---UGGC-UCUGCG- -5'
15673 3' -60.7 NC_004065.1 + 111647 0.67 0.756859
Target:  5'- -cGGCCCGGucGCGCaugaccuggcugguGAGAgCGGGAgCGCc -3'
miRNA:   3'- guCCGGGCU--CGCG--------------CUCUgGCUCU-GCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.