miRNA display CGI


Results 81 - 100 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15673 3' -60.7 NC_004065.1 + 23251 0.68 0.7045
Target:  5'- -uGGCUCGAGUGUGGuuucuguucgcGAUCGGGGCGa -3'
miRNA:   3'- guCCGGGCUCGCGCU-----------CUGGCUCUGCg -5'
15673 3' -60.7 NC_004065.1 + 262 0.68 0.7045
Target:  5'- gGGGCCCGcGCGCacucaGAcGGCCGGGGgGg -3'
miRNA:   3'- gUCCGGGCuCGCG-----CU-CUGGCUCUgCg -5'
15673 3' -60.7 NC_004065.1 + 108997 0.68 0.713851
Target:  5'- uGGGCuuGAagacccGCGUGAGGgCGAcGCGCg -3'
miRNA:   3'- gUCCGggCU------CGCGCUCUgGCUcUGCG- -5'
15673 3' -60.7 NC_004065.1 + 196646 0.68 0.713851
Target:  5'- aAGGCCaucgcguucgGGGCGCGcuucGACCGuccGGCGCg -3'
miRNA:   3'- gUCCGGg---------CUCGCGCu---CUGGCu--CUGCG- -5'
15673 3' -60.7 NC_004065.1 + 198374 0.69 0.676156
Target:  5'- gCGGGCCUGAcgcgGCGCGucGCCGAcaGCGUg -3'
miRNA:   3'- -GUCCGGGCU----CGCGCucUGGCUc-UGCG- -5'
15673 3' -60.7 NC_004065.1 + 146021 0.69 0.676156
Target:  5'- gAGcGCCCGcgaccGGCGCGcGACgCGAucGGCGCa -3'
miRNA:   3'- gUC-CGGGC-----UCGCGCuCUG-GCU--CUGCG- -5'
15673 3' -60.7 NC_004065.1 + 48039 0.69 0.676156
Target:  5'- -uGGCCCGAG---GAGAUCGAGGgGCu -3'
miRNA:   3'- guCCGGGCUCgcgCUCUGGCUCUgCG- -5'
15673 3' -60.7 NC_004065.1 + 168261 0.69 0.676156
Target:  5'- -cGGCCCGAGaCGCGucGACgGAGcuguCGUc -3'
miRNA:   3'- guCCGGGCUC-GCGCu-CUGgCUCu---GCG- -5'
15673 3' -60.7 NC_004065.1 + 90151 0.69 0.685645
Target:  5'- gAGGUCCGGGCaCGGGAgggaCGAGAUcaGCg -3'
miRNA:   3'- gUCCGGGCUCGcGCUCUg---GCUCUG--CG- -5'
15673 3' -60.7 NC_004065.1 + 103999 0.69 0.685645
Target:  5'- gAGGCCCcgccGCGCGA-ACCGAcgccgaaggaGGCGCg -3'
miRNA:   3'- gUCCGGGcu--CGCGCUcUGGCU----------CUGCG- -5'
15673 3' -60.7 NC_004065.1 + 83448 0.69 0.676156
Target:  5'- gGGGaCUCGAGaGCGGGccGCCGGGAgCGCc -3'
miRNA:   3'- gUCC-GGGCUCgCGCUC--UGGCUCU-GCG- -5'
15673 3' -60.7 NC_004065.1 + 195045 0.69 0.663774
Target:  5'- gGGGCUCGAcgaucgcccuGCGCGAcccggucucgggacGGCgCGAGACGUu -3'
miRNA:   3'- gUCCGGGCU----------CGCGCU--------------CUG-GCUCUGCG- -5'
15673 3' -60.7 NC_004065.1 + 27720 0.69 0.65709
Target:  5'- gCAGGaaCCCGAgcucGCGCGuGaugcGCgGAGACGCg -3'
miRNA:   3'- -GUCC--GGGCU----CGCGCuC----UGgCUCUGCG- -5'
15673 3' -60.7 NC_004065.1 + 121566 0.69 0.65709
Target:  5'- gAGcCCCGAGUGCGGGGCCGcuGCcCg -3'
miRNA:   3'- gUCcGGGCUCGCGCUCUGGCucUGcG- -5'
15673 3' -60.7 NC_004065.1 + 122619 0.69 0.65709
Target:  5'- gAGGUCCcAGUcCGAGACgGAGACGa -3'
miRNA:   3'- gUCCGGGcUCGcGCUCUGgCUCUGCg -5'
15673 3' -60.7 NC_004065.1 + 133688 0.69 0.65709
Target:  5'- aAGGCCggcauCGAGCaCGAGACCcuggaAGACGUg -3'
miRNA:   3'- gUCCGG-----GCUCGcGCUCUGGc----UCUGCG- -5'
15673 3' -60.7 NC_004065.1 + 74147 0.69 0.676156
Target:  5'- gGGuGCCCGGGC-CGAGAaccCCGcAGGCGg -3'
miRNA:   3'- gUC-CGGGCUCGcGCUCU---GGC-UCUGCg -5'
15673 3' -60.7 NC_004065.1 + 50830 0.69 0.685646
Target:  5'- aCGGGCCCGAagagaaCGUGAacGCCG-GGCGCg -3'
miRNA:   3'- -GUCCGGGCUc-----GCGCUc-UGGCuCUGCG- -5'
15673 3' -60.7 NC_004065.1 + 168590 0.69 0.685646
Target:  5'- -cGGCCCGAGUGCuAGcuGCgGAGGCa- -3'
miRNA:   3'- guCCGGGCUCGCGcUC--UGgCUCUGcg -5'
15673 3' -60.7 NC_004065.1 + 143121 0.69 0.685646
Target:  5'- --cGCcgCCGAGgGCGAGACCGGcGcCGCg -3'
miRNA:   3'- gucCG--GGCUCgCGCUCUGGCU-CuGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.