miRNA display CGI


Results 61 - 80 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15673 3' -60.7 NC_004065.1 + 143121 0.69 0.685646
Target:  5'- --cGCcgCCGAGgGCGAGACCGGcGcCGCg -3'
miRNA:   3'- gucCG--GGCUCgCGCUCUGGCU-CuGCG- -5'
15673 3' -60.7 NC_004065.1 + 168590 0.69 0.685646
Target:  5'- -cGGCCCGAGUGCuAGcuGCgGAGGCa- -3'
miRNA:   3'- guCCGGGCUCGCGcUC--UGgCUCUGcg -5'
15673 3' -60.7 NC_004065.1 + 81652 0.68 0.695096
Target:  5'- aCGGGCCCGGGUGgGcaAGuACUGccugcaGGACGCc -3'
miRNA:   3'- -GUCCGGGCUCGCgC--UC-UGGC------UCUGCG- -5'
15673 3' -60.7 NC_004065.1 + 225135 0.68 0.698864
Target:  5'- uGGGCUCGGGaCGCGGacgcuccuccuggguGACCGAGcCGa -3'
miRNA:   3'- gUCCGGGCUC-GCGCU---------------CUGGCUCuGCg -5'
15673 3' -60.7 NC_004065.1 + 201668 0.68 0.703562
Target:  5'- -cGaGUCCGAgcguguaccaGCGCGAGGacaucuuUCGAGACGCg -3'
miRNA:   3'- guC-CGGGCU----------CGCGCUCU-------GGCUCUGCG- -5'
15673 3' -60.7 NC_004065.1 + 61688 0.68 0.7045
Target:  5'- gGGGUCCGcAGCGCGucacGuCCGcGGCGUa -3'
miRNA:   3'- gUCCGGGC-UCGCGCu---CuGGCuCUGCG- -5'
15673 3' -60.7 NC_004065.1 + 65015 0.68 0.7045
Target:  5'- gCAGGUCgGAGCGCuccuuGGCCGAcagcgaGCGCg -3'
miRNA:   3'- -GUCCGGgCUCGCGcu---CUGGCUc-----UGCG- -5'
15673 3' -60.7 NC_004065.1 + 23251 0.68 0.7045
Target:  5'- -uGGCUCGAGUGUGGuuucuguucgcGAUCGGGGCGa -3'
miRNA:   3'- guCCGGGCUCGCGCU-----------CUGGCUCUGCg -5'
15673 3' -60.7 NC_004065.1 + 262 0.68 0.7045
Target:  5'- gGGGCCCGcGCGCacucaGAcGGCCGGGGgGg -3'
miRNA:   3'- gUCCGGGCuCGCG-----CU-CUGGCUCUgCg -5'
15673 3' -60.7 NC_004065.1 + 196646 0.68 0.713851
Target:  5'- aAGGCCaucgcguucgGGGCGCGcuucGACCGuccGGCGCg -3'
miRNA:   3'- gUCCGGg---------CUCGCGCu---CUGGCu--CUGCG- -5'
15673 3' -60.7 NC_004065.1 + 108997 0.68 0.713851
Target:  5'- uGGGCuuGAagacccGCGUGAGGgCGAcGCGCg -3'
miRNA:   3'- gUCCGggCU------CGCGCUCUgGCUcUGCG- -5'
15673 3' -60.7 NC_004065.1 + 195074 0.68 0.713851
Target:  5'- gCAGGUCgggCGAGCGCGcggcgcAGACCcccaGGGGCGUc -3'
miRNA:   3'- -GUCCGG---GCUCGCGC------UCUGG----CUCUGCG- -5'
15673 3' -60.7 NC_004065.1 + 88564 0.68 0.723141
Target:  5'- uCAGGCgCGA---CGAGGCCGAgGACGUg -3'
miRNA:   3'- -GUCCGgGCUcgcGCUCUGGCU-CUGCG- -5'
15673 3' -60.7 NC_004065.1 + 221990 0.68 0.723141
Target:  5'- uCGGGaCCCGAagacgauaccGCGUGGGACUGcaGCGCc -3'
miRNA:   3'- -GUCC-GGGCU----------CGCGCUCUGGCucUGCG- -5'
15673 3' -60.7 NC_004065.1 + 147974 0.68 0.729604
Target:  5'- aGGGCCCGuAGCGCGGcGuccagcucauccgaGCCG-GugGUg -3'
miRNA:   3'- gUCCGGGC-UCGCGCU-C--------------UGGCuCugCG- -5'
15673 3' -60.7 NC_004065.1 + 59564 0.68 0.731444
Target:  5'- -cGGUCUGAGCuauaaaaGCGAGACUGucuGAuCGCg -3'
miRNA:   3'- guCCGGGCUCG-------CGCUCUGGCu--CU-GCG- -5'
15673 3' -60.7 NC_004065.1 + 226056 0.68 0.732363
Target:  5'- cCAGGCCUGGGcCGCGGGgACCcucuGCGUu -3'
miRNA:   3'- -GUCCGGGCUC-GCGCUC-UGGcuc-UGCG- -5'
15673 3' -60.7 NC_004065.1 + 77543 0.68 0.732363
Target:  5'- aAGuaCCG-GCGCGcGACCGAGggcucguucGCGCg -3'
miRNA:   3'- gUCcgGGCuCGCGCuCUGGCUC---------UGCG- -5'
15673 3' -60.7 NC_004065.1 + 229295 0.68 0.732363
Target:  5'- -cGGUCaacuuucccuUGAGCGCugcggGAGGCCGAGuGCGCg -3'
miRNA:   3'- guCCGG----------GCUCGCG-----CUCUGGCUC-UGCG- -5'
15673 3' -60.7 NC_004065.1 + 64573 0.68 0.740597
Target:  5'- -uGGUCCGAGUccaGC-AGAcccuguuggauguCCGAGACGCg -3'
miRNA:   3'- guCCGGGCUCG---CGcUCU-------------GGCUCUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.