miRNA display CGI


Results 61 - 80 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15673 3' -60.7 NC_004065.1 + 40719 0.67 0.758647
Target:  5'- uUAGaGUCCGAGCuCGAGAgCGAgggagauaauaguGACGCc -3'
miRNA:   3'- -GUC-CGGGCUCGcGCUCUgGCU-------------CUGCG- -5'
15673 3' -60.7 NC_004065.1 + 111647 0.67 0.756859
Target:  5'- -cGGCCCGGucGCGCaugaccuggcugguGAGAgCGGGAgCGCc -3'
miRNA:   3'- guCCGGGCU--CGCG--------------CUCUgGCUCU-GCG- -5'
15673 3' -60.7 NC_004065.1 + 198553 0.67 0.750569
Target:  5'- cCAGGUCCGcGCGCGgcacGGACCGcuGCa- -3'
miRNA:   3'- -GUCCGGGCuCGCGC----UCUGGCucUGcg -5'
15673 3' -60.7 NC_004065.1 + 118995 0.67 0.750569
Target:  5'- aAGGCaccCCGAGCcgacuGCGAGACCugccgGAcacGACGCu -3'
miRNA:   3'- gUCCG---GGCUCG-----CGCUCUGG-----CU---CUGCG- -5'
15673 3' -60.7 NC_004065.1 + 162721 0.68 0.741508
Target:  5'- -uGGCCgGccGCGCGAGgccuucGCCGAaGCGCa -3'
miRNA:   3'- guCCGGgCu-CGCGCUC------UGGCUcUGCG- -5'
15673 3' -60.7 NC_004065.1 + 230278 0.68 0.741508
Target:  5'- -GGGCCCGcGCGCacucaGAcGGCCGGGGgGg -3'
miRNA:   3'- gUCCGGGCuCGCG-----CU-CUGGCUCUgCg -5'
15673 3' -60.7 NC_004065.1 + 64573 0.68 0.740597
Target:  5'- -uGGUCCGAGUccaGC-AGAcccuguuggauguCCGAGACGCg -3'
miRNA:   3'- guCCGGGCUCG---CGcUCU-------------GGCUCUGCG- -5'
15673 3' -60.7 NC_004065.1 + 77543 0.68 0.732363
Target:  5'- aAGuaCCG-GCGCGcGACCGAGggcucguucGCGCg -3'
miRNA:   3'- gUCcgGGCuCGCGCuCUGGCUC---------UGCG- -5'
15673 3' -60.7 NC_004065.1 + 226056 0.68 0.732363
Target:  5'- cCAGGCCUGGGcCGCGGGgACCcucuGCGUu -3'
miRNA:   3'- -GUCCGGGCUC-GCGCUC-UGGcuc-UGCG- -5'
15673 3' -60.7 NC_004065.1 + 229295 0.68 0.732363
Target:  5'- -cGGUCaacuuucccuUGAGCGCugcggGAGGCCGAGuGCGCg -3'
miRNA:   3'- guCCGG----------GCUCGCG-----CUCUGGCUC-UGCG- -5'
15673 3' -60.7 NC_004065.1 + 59564 0.68 0.731444
Target:  5'- -cGGUCUGAGCuauaaaaGCGAGACUGucuGAuCGCg -3'
miRNA:   3'- guCCGGGCUCG-------CGCUCUGGCu--CU-GCG- -5'
15673 3' -60.7 NC_004065.1 + 147974 0.68 0.729604
Target:  5'- aGGGCCCGuAGCGCGGcGuccagcucauccgaGCCG-GugGUg -3'
miRNA:   3'- gUCCGGGC-UCGCGCU-C--------------UGGCuCugCG- -5'
15673 3' -60.7 NC_004065.1 + 221990 0.68 0.723141
Target:  5'- uCGGGaCCCGAagacgauaccGCGUGGGACUGcaGCGCc -3'
miRNA:   3'- -GUCC-GGGCU----------CGCGCUCUGGCucUGCG- -5'
15673 3' -60.7 NC_004065.1 + 88564 0.68 0.723141
Target:  5'- uCAGGCgCGA---CGAGGCCGAgGACGUg -3'
miRNA:   3'- -GUCCGgGCUcgcGCUCUGGCU-CUGCG- -5'
15673 3' -60.7 NC_004065.1 + 196646 0.68 0.713851
Target:  5'- aAGGCCaucgcguucgGGGCGCGcuucGACCGuccGGCGCg -3'
miRNA:   3'- gUCCGGg---------CUCGCGCu---CUGGCu--CUGCG- -5'
15673 3' -60.7 NC_004065.1 + 108997 0.68 0.713851
Target:  5'- uGGGCuuGAagacccGCGUGAGGgCGAcGCGCg -3'
miRNA:   3'- gUCCGggCU------CGCGCUCUgGCUcUGCG- -5'
15673 3' -60.7 NC_004065.1 + 195074 0.68 0.713851
Target:  5'- gCAGGUCgggCGAGCGCGcggcgcAGACCcccaGGGGCGUc -3'
miRNA:   3'- -GUCCGG---GCUCGCGC------UCUGG----CUCUGCG- -5'
15673 3' -60.7 NC_004065.1 + 61688 0.68 0.7045
Target:  5'- gGGGUCCGcAGCGCGucacGuCCGcGGCGUa -3'
miRNA:   3'- gUCCGGGC-UCGCGCu---CuGGCuCUGCG- -5'
15673 3' -60.7 NC_004065.1 + 23251 0.68 0.7045
Target:  5'- -uGGCUCGAGUGUGGuuucuguucgcGAUCGGGGCGa -3'
miRNA:   3'- guCCGGGCUCGCGCU-----------CUGGCUCUGCg -5'
15673 3' -60.7 NC_004065.1 + 262 0.68 0.7045
Target:  5'- gGGGCCCGcGCGCacucaGAcGGCCGGGGgGg -3'
miRNA:   3'- gUCCGGGCuCGCG-----CU-CUGGCUCUgCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.