miRNA display CGI


Results 41 - 60 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15673 3' -60.7 NC_004065.1 + 66612 0.66 0.842611
Target:  5'- aCAGGauCCgGAGcCGCG-GGCUGcGGCGCu -3'
miRNA:   3'- -GUCC--GGgCUC-GCGCuCUGGCuCUGCG- -5'
15673 3' -60.7 NC_004065.1 + 68911 0.66 0.834952
Target:  5'- gAGGUgacgCCGAGCGCGgAGAUCaAGaaguuGCGCg -3'
miRNA:   3'- gUCCG----GGCUCGCGC-UCUGGcUC-----UGCG- -5'
15673 3' -60.7 NC_004065.1 + 72099 0.66 0.84033
Target:  5'- -cGGCCUGAuCGCcAGACUGgacaggaggacgguGGACGCg -3'
miRNA:   3'- guCCGGGCUcGCGcUCUGGC--------------UCUGCG- -5'
15673 3' -60.7 NC_004065.1 + 74042 0.72 0.506214
Target:  5'- --cGCCgGAGUGCGAGA-CGAGGCGg -3'
miRNA:   3'- gucCGGgCUCGCGCUCUgGCUCUGCg -5'
15673 3' -60.7 NC_004065.1 + 74147 0.69 0.676156
Target:  5'- gGGuGCCCGGGC-CGAGAaccCCGcAGGCGg -3'
miRNA:   3'- gUC-CGGGCUCGcGCUCU---GGC-UCUGCg -5'
15673 3' -60.7 NC_004065.1 + 74648 0.66 0.802762
Target:  5'- cCGGGUCUGAG-GUccGGACCGcGGCGCg -3'
miRNA:   3'- -GUCCGGGCUCgCGc-UCUGGCuCUGCG- -5'
15673 3' -60.7 NC_004065.1 + 74831 0.75 0.349679
Target:  5'- --cGCCCGGGU-CGGGACCGAGGgGCg -3'
miRNA:   3'- gucCGGGCUCGcGCUCUGGCUCUgCG- -5'
15673 3' -60.7 NC_004065.1 + 77082 0.67 0.785829
Target:  5'- cCAGGCCCuguacauCGCGAGcGCCGcGACGg -3'
miRNA:   3'- -GUCCGGGcuc----GCGCUC-UGGCuCUGCg -5'
15673 3' -60.7 NC_004065.1 + 77543 0.68 0.732363
Target:  5'- aAGuaCCG-GCGCGcGACCGAGggcucguucGCGCg -3'
miRNA:   3'- gUCcgGGCuCGCGCuCUGGCUC---------UGCG- -5'
15673 3' -60.7 NC_004065.1 + 78922 0.67 0.79436
Target:  5'- uCGGGCgCCGcGGCGCc-GGCCGcuGCGCu -3'
miRNA:   3'- -GUCCG-GGC-UCGCGcuCUGGCucUGCG- -5'
15673 3' -60.7 NC_004065.1 + 81652 0.68 0.695096
Target:  5'- aCGGGCCCGGGUGgGcaAGuACUGccugcaGGACGCc -3'
miRNA:   3'- -GUCCGGGCUCGCgC--UC-UGGC------UCUGCG- -5'
15673 3' -60.7 NC_004065.1 + 83448 0.69 0.676156
Target:  5'- gGGGaCUCGAGaGCGGGccGCCGGGAgCGCc -3'
miRNA:   3'- gUCC-GGGCUCgCGCUC--UGGCUCU-GCG- -5'
15673 3' -60.7 NC_004065.1 + 85760 0.7 0.617844
Target:  5'- -cGGCCCGGGUcucucGaccugacauaaguCGGcGACCGAGGCGCg -3'
miRNA:   3'- guCCGGGCUCG-----C-------------GCU-CUGGCUCUGCG- -5'
15673 3' -60.7 NC_004065.1 + 86990 0.67 0.768412
Target:  5'- aAGGgCCGAggcgGCGUcgGGGGCCGGGGCa- -3'
miRNA:   3'- gUCCgGGCU----CGCG--CUCUGGCUCUGcg -5'
15673 3' -60.7 NC_004065.1 + 88564 0.68 0.723141
Target:  5'- uCAGGCgCGA---CGAGGCCGAgGACGUg -3'
miRNA:   3'- -GUCCGgGCUcgcGCUCUGGCU-CUGCG- -5'
15673 3' -60.7 NC_004065.1 + 88960 0.7 0.609236
Target:  5'- aCGGGCUCGcGCGUGAugguGGCCaccuGGGGCGCc -3'
miRNA:   3'- -GUCCGGGCuCGCGCU----CUGG----CUCUGCG- -5'
15673 3' -60.7 NC_004065.1 + 90151 0.69 0.685645
Target:  5'- gAGGUCCGGGCaCGGGAgggaCGAGAUcaGCg -3'
miRNA:   3'- gUCCGGGCUCGcGCUCUg---GCUCUG--CG- -5'
15673 3' -60.7 NC_004065.1 + 92343 0.67 0.763101
Target:  5'- cCGGGCUCGGagcugcuggcgcaacGCGCGGcccuCCGAGcGCGCg -3'
miRNA:   3'- -GUCCGGGCU---------------CGCGCUcu--GGCUC-UGCG- -5'
15673 3' -60.7 NC_004065.1 + 92517 0.66 0.811029
Target:  5'- -uGGCCCGGugccucgcgcGCGCGuacGGGCgGgcGGGCGCg -3'
miRNA:   3'- guCCGGGCU----------CGCGC---UCUGgC--UCUGCG- -5'
15673 3' -60.7 NC_004065.1 + 93680 0.73 0.453161
Target:  5'- gGGGaUCCGGGUG-GGGugCGGGGCGCu -3'
miRNA:   3'- gUCC-GGGCUCGCgCUCugGCUCUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.