miRNA display CGI


Results 61 - 80 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15673 3' -60.7 NC_004065.1 + 98800 0.66 0.830278
Target:  5'- uUAGGCCgGgugccAGCGUG-GGCCGGacggauuuauuccuuGACGCa -3'
miRNA:   3'- -GUCCGGgC-----UCGCGCuCUGGCU---------------CUGCG- -5'
15673 3' -60.7 NC_004065.1 + 99423 0.67 0.75954
Target:  5'- gGGGCCCGAGCGgcaGAcGCCGccucgacaucGCGCg -3'
miRNA:   3'- gUCCGGGCUCGCg--CUcUGGCuc--------UGCG- -5'
15673 3' -60.7 NC_004065.1 + 103011 0.73 0.427791
Target:  5'- uUAGGUCCGAGCGCGgcacgucgaaAGACaucauGACGCu -3'
miRNA:   3'- -GUCCGGGCUCGCGC----------UCUGgcu--CUGCG- -5'
15673 3' -60.7 NC_004065.1 + 103999 0.69 0.685645
Target:  5'- gAGGCCCcgccGCGCGA-ACCGAcgccgaaggaGGCGCg -3'
miRNA:   3'- gUCCGGGcu--CGCGCUcUGGCU----------CUGCG- -5'
15673 3' -60.7 NC_004065.1 + 108154 0.79 0.205748
Target:  5'- gAGGUCCugucGAGCGuCGAcauGACCGAGACGCu -3'
miRNA:   3'- gUCCGGG----CUCGC-GCU---CUGGCUCUGCG- -5'
15673 3' -60.7 NC_004065.1 + 108997 0.68 0.713851
Target:  5'- uGGGCuuGAagacccGCGUGAGGgCGAcGCGCg -3'
miRNA:   3'- gUCCGggCU------CGCGCUCUgGCUcUGCG- -5'
15673 3' -60.7 NC_004065.1 + 109461 0.69 0.637954
Target:  5'- ----gCCGAGCaggaaGAGGCCGAGGCGCc -3'
miRNA:   3'- guccgGGCUCGcg---CUCUGGCUCUGCG- -5'
15673 3' -60.7 NC_004065.1 + 110155 0.66 0.834952
Target:  5'- -cGGCggaCGAGC-CGGGACCccccGACGCg -3'
miRNA:   3'- guCCGg--GCUCGcGCUCUGGcu--CUGCG- -5'
15673 3' -60.7 NC_004065.1 + 110538 0.69 0.647528
Target:  5'- -nGGCCgGGucGCGCGAGuACaCGGGACGa -3'
miRNA:   3'- guCCGGgCU--CGCGCUC-UG-GCUCUGCg -5'
15673 3' -60.7 NC_004065.1 + 110561 0.78 0.241493
Target:  5'- -cGGCCaGAGCuGCGAGACCGuGACGg -3'
miRNA:   3'- guCCGGgCUCG-CGCUCUGGCuCUGCg -5'
15673 3' -60.7 NC_004065.1 + 110832 0.72 0.506214
Target:  5'- cCAGGCaCC-AGUGCGGGGCgCGGGcCGCc -3'
miRNA:   3'- -GUCCG-GGcUCGCGCUCUG-GCUCuGCG- -5'
15673 3' -60.7 NC_004065.1 + 111647 0.67 0.756859
Target:  5'- -cGGCCCGGucGCGCaugaccuggcugguGAGAgCGGGAgCGCc -3'
miRNA:   3'- guCCGGGCU--CGCG--------------CUCUgGCUCU-GCG- -5'
15673 3' -60.7 NC_004065.1 + 112891 0.74 0.375069
Target:  5'- cCAGGCCCGucuccguccggaucaGGUGCGAcACCaGGGCGCg -3'
miRNA:   3'- -GUCCGGGC---------------UCGCGCUcUGGcUCUGCG- -5'
15673 3' -60.7 NC_004065.1 + 113265 0.67 0.785829
Target:  5'- gAGGCgau-GCGCGcucacgugccGACCGAGACGCu -3'
miRNA:   3'- gUCCGggcuCGCGCu---------CUGGCUCUGCG- -5'
15673 3' -60.7 NC_004065.1 + 113381 0.71 0.533724
Target:  5'- --cGCUgGGGCGCGGGAUCGAGcUGCu -3'
miRNA:   3'- gucCGGgCUCGCGCUCUGGCUCuGCG- -5'
15673 3' -60.7 NC_004065.1 + 113653 0.67 0.785829
Target:  5'- -uGGCCaCGAcGuCGCGAGggaGCCGcAGGCGUu -3'
miRNA:   3'- guCCGG-GCU-C-GCGCUC---UGGC-UCUGCG- -5'
15673 3' -60.7 NC_004065.1 + 113874 0.66 0.811029
Target:  5'- gGGGUCCGcuuccAGCcccuugGCGGGACCGcGGGCGa -3'
miRNA:   3'- gUCCGGGC-----UCG------CGCUCUGGC-UCUGCg -5'
15673 3' -60.7 NC_004065.1 + 113942 0.75 0.335325
Target:  5'- gCGGcGCUCGGGgGCuGGGACgGAGACGCc -3'
miRNA:   3'- -GUC-CGGGCUCgCG-CUCUGgCUCUGCG- -5'
15673 3' -60.7 NC_004065.1 + 117400 0.66 0.834952
Target:  5'- -cGGCCgCGcGCGCuGGGCuCGcGGCGCg -3'
miRNA:   3'- guCCGG-GCuCGCGcUCUG-GCuCUGCG- -5'
15673 3' -60.7 NC_004065.1 + 118995 0.67 0.750569
Target:  5'- aAGGCaccCCGAGCcgacuGCGAGACCugccgGAcacGACGCu -3'
miRNA:   3'- gUCCG---GGCUCG-----CGCUCUGG-----CU---CUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.