miRNA display CGI


Results 81 - 100 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15673 3' -60.7 NC_004065.1 + 120566 0.7 0.590154
Target:  5'- -cGGCgCGAGCggGCGGGACCuccGGCGCc -3'
miRNA:   3'- guCCGgGCUCG--CGCUCUGGcu-CUGCG- -5'
15673 3' -60.7 NC_004065.1 + 120682 0.66 0.842611
Target:  5'- aGGGCCCGGaCGaggucgGAGAgCGAGAagaaCGCg -3'
miRNA:   3'- gUCCGGGCUcGCg-----CUCUgGCUCU----GCG- -5'
15673 3' -60.7 NC_004065.1 + 121566 0.69 0.65709
Target:  5'- gAGcCCCGAGUGCGGGGCCGcuGCcCg -3'
miRNA:   3'- gUCcGGGCUCGCGCUCUGGCucUGcG- -5'
15673 3' -60.7 NC_004065.1 + 122619 0.69 0.65709
Target:  5'- gAGGUCCcAGUcCGAGACgGAGACGa -3'
miRNA:   3'- gUCCGGGcUCGcGCUCUGgCUCUGCg -5'
15673 3' -60.7 NC_004065.1 + 122737 0.67 0.785829
Target:  5'- --cGCCC-AGCuGCGGGucgugcgcuACCGGGACGCc -3'
miRNA:   3'- gucCGGGcUCG-CGCUC---------UGGCUCUGCG- -5'
15673 3' -60.7 NC_004065.1 + 123720 0.72 0.497178
Target:  5'- gGGGCUCGcAGCGCGGGucGCUGGgcGACGUg -3'
miRNA:   3'- gUCCGGGC-UCGCGCUC--UGGCU--CUGCG- -5'
15673 3' -60.7 NC_004065.1 + 124019 0.7 0.609236
Target:  5'- aCAGGCgaCCGGcGCGCGGcGcACCGAGGUGCu -3'
miRNA:   3'- -GUCCG--GGCU-CGCGCU-C-UGGCUCUGCG- -5'
15673 3' -60.7 NC_004065.1 + 125754 0.67 0.768412
Target:  5'- aGGGCCCG-GCGuCGuGuaucGCgGGGugGCa -3'
miRNA:   3'- gUCCGGGCuCGC-GCuC----UGgCUCugCG- -5'
15673 3' -60.7 NC_004065.1 + 126061 0.66 0.842611
Target:  5'- aCAGGaucCCCcAGCGCaucucgcacGCCGAGGCGCu -3'
miRNA:   3'- -GUCC---GGGcUCGCGcuc------UGGCUCUGCG- -5'
15673 3' -60.7 NC_004065.1 + 126243 0.66 0.82713
Target:  5'- uCAcGCCCGuGCgGCG-GAUCGAGcCGCc -3'
miRNA:   3'- -GUcCGGGCuCG-CGCuCUGGCUCuGCG- -5'
15673 3' -60.7 NC_004065.1 + 127076 0.67 0.777177
Target:  5'- aCAGGUCCcucGAGUGgccacCGGGGCCGGGAuccccaccuCGCg -3'
miRNA:   3'- -GUCCGGG---CUCGC-----GCUCUGGCUCU---------GCG- -5'
15673 3' -60.7 NC_004065.1 + 127233 0.66 0.842611
Target:  5'- gAGGaUCGGGCGCGGuGGCgGGGAUGa -3'
miRNA:   3'- gUCCgGGCUCGCGCU-CUGgCUCUGCg -5'
15673 3' -60.7 NC_004065.1 + 127433 0.74 0.387442
Target:  5'- aGGGCCCgccugaaaGAGCGagagaGAGACCGAGAgGg -3'
miRNA:   3'- gUCCGGG--------CUCGCg----CUCUGGCUCUgCg -5'
15673 3' -60.7 NC_004065.1 + 130282 0.67 0.777177
Target:  5'- uCAGGgUgGAGCGCGAGGaggacgaCGAGAgGg -3'
miRNA:   3'- -GUCCgGgCUCGCGCUCUg------GCUCUgCg -5'
15673 3' -60.7 NC_004065.1 + 130900 0.67 0.79436
Target:  5'- uGGGCaugaCGGGCGUG-GGCUGccuggcggcGGGCGCg -3'
miRNA:   3'- gUCCGg---GCUCGCGCuCUGGC---------UCUGCG- -5'
15673 3' -60.7 NC_004065.1 + 133688 0.69 0.65709
Target:  5'- aAGGCCggcauCGAGCaCGAGACCcuggaAGACGUg -3'
miRNA:   3'- gUCCGG-----GCUCGcGCUCUGGc----UCUGCG- -5'
15673 3' -60.7 NC_004065.1 + 135092 0.75 0.342448
Target:  5'- aGGGCCCGucuccGgGgGAGGCCGAGAgGUg -3'
miRNA:   3'- gUCCGGGCu----CgCgCUCUGGCUCUgCG- -5'
15673 3' -60.7 NC_004065.1 + 135339 0.66 0.802762
Target:  5'- aAGGUCagGGGcCGCGAGAUCaaggccAGACGCg -3'
miRNA:   3'- gUCCGGg-CUC-GCGCUCUGGc-----UCUGCG- -5'
15673 3' -60.7 NC_004065.1 + 135561 0.72 0.470521
Target:  5'- -cGGCUCGAGCGggccgaaguCGGcGGCgGAGACGCg -3'
miRNA:   3'- guCCGGGCUCGC---------GCU-CUGgCUCUGCG- -5'
15673 3' -60.7 NC_004065.1 + 135647 0.66 0.842611
Target:  5'- aCGGGgUCGGGCGCG--GCCGGcGCGUc -3'
miRNA:   3'- -GUCCgGGCUCGCGCucUGGCUcUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.