miRNA display CGI


Results 121 - 140 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15673 3' -60.7 NC_004065.1 + 193930 0.66 0.802762
Target:  5'- --cGCCUGAGuCGCGcGGACCaGAgGugGCa -3'
miRNA:   3'- gucCGGGCUC-GCGC-UCUGG-CU-CugCG- -5'
15673 3' -60.7 NC_004065.1 + 194721 0.66 0.830278
Target:  5'- gAGGCgUGAGCGgcggcgccgcCGugcccaaccgcuucGACCGAGGCGCc -3'
miRNA:   3'- gUCCGgGCUCGC----------GCu-------------CUGGCUCUGCG- -5'
15673 3' -60.7 NC_004065.1 + 195045 0.69 0.663774
Target:  5'- gGGGCUCGAcgaucgcccuGCGCGAcccggucucgggacGGCgCGAGACGUu -3'
miRNA:   3'- gUCCGGGCU----------CGCGCU--------------CUG-GCUCUGCG- -5'
15673 3' -60.7 NC_004065.1 + 195074 0.68 0.713851
Target:  5'- gCAGGUCgggCGAGCGCGcggcgcAGACCcccaGGGGCGUc -3'
miRNA:   3'- -GUCCGG---GCUCGCGC------UCUGG----CUCUGCG- -5'
15673 3' -60.7 NC_004065.1 + 196646 0.68 0.713851
Target:  5'- aAGGCCaucgcguucgGGGCGCGcuucGACCGuccGGCGCg -3'
miRNA:   3'- gUCCGGg---------CUCGCGCu---CUGGCu--CUGCG- -5'
15673 3' -60.7 NC_004065.1 + 198374 0.69 0.676156
Target:  5'- gCGGGCCUGAcgcgGCGCGucGCCGAcaGCGUg -3'
miRNA:   3'- -GUCCGGGCU----CGCGCucUGGCUc-UGCG- -5'
15673 3' -60.7 NC_004065.1 + 198472 0.7 0.628377
Target:  5'- aCAGGCCgGGGgGCcu-GCCG-GACGCg -3'
miRNA:   3'- -GUCCGGgCUCgCGcucUGGCuCUGCG- -5'
15673 3' -60.7 NC_004065.1 + 198553 0.67 0.750569
Target:  5'- cCAGGUCCGcGCGCGgcacGGACCGcuGCa- -3'
miRNA:   3'- -GUCCGGGCuCGCGC----UCUGGCucUGcg -5'
15673 3' -60.7 NC_004065.1 + 199176 0.72 0.470521
Target:  5'- uCAGaacGCCCGgcGGCGCGcGAUCGAGAgGCu -3'
miRNA:   3'- -GUC---CGGGC--UCGCGCuCUGGCUCUgCG- -5'
15673 3' -60.7 NC_004065.1 + 199277 0.66 0.819154
Target:  5'- --cGCCgGGGUgGCGAGAUgGAGAgGCc -3'
miRNA:   3'- gucCGGgCUCG-CGCUCUGgCUCUgCG- -5'
15673 3' -60.7 NC_004065.1 + 201668 0.68 0.703562
Target:  5'- -cGaGUCCGAgcguguaccaGCGCGAGGacaucuuUCGAGACGCg -3'
miRNA:   3'- guC-CGGGCU----------CGCGCUCU-------GGCUCUGCG- -5'
15673 3' -60.7 NC_004065.1 + 207796 0.66 0.841852
Target:  5'- uCAGGCgCGAcgacgcggagcGCGCGgcgaggaGGACCGAcGACcGCu -3'
miRNA:   3'- -GUCCGgGCU-----------CGCGC-------UCUGGCU-CUG-CG- -5'
15673 3' -60.7 NC_004065.1 + 211340 0.73 0.444612
Target:  5'- aAGGCCUGAGCc---GACCGAGGCGg -3'
miRNA:   3'- gUCCGGGCUCGcgcuCUGGCUCUGCg -5'
15673 3' -60.7 NC_004065.1 + 221990 0.68 0.723141
Target:  5'- uCGGGaCCCGAagacgauaccGCGUGGGACUGcaGCGCc -3'
miRNA:   3'- -GUCC-GGGCU----------CGCGCUCUGGCucUGCG- -5'
15673 3' -60.7 NC_004065.1 + 222622 0.72 0.497178
Target:  5'- -cGGCCCaGAagauGCGCGAGuACCGAGGagggccCGCg -3'
miRNA:   3'- guCCGGG-CU----CGCGCUC-UGGCUCU------GCG- -5'
15673 3' -60.7 NC_004065.1 + 222984 0.66 0.816732
Target:  5'- uGGGuCCCGGGCGagGAGcuccugacgaucgaGCCGgugguaccGGACGCg -3'
miRNA:   3'- gUCC-GGGCUCGCg-CUC--------------UGGC--------UCUGCG- -5'
15673 3' -60.7 NC_004065.1 + 223870 0.66 0.810209
Target:  5'- -cGGCCCG-GCcaucucgGCcGGAUCGAGAUGUa -3'
miRNA:   3'- guCCGGGCuCG-------CGcUCUGGCUCUGCG- -5'
15673 3' -60.7 NC_004065.1 + 223901 0.66 0.819154
Target:  5'- --aGUCCGcuCGCGaAGGCCGAGACcaGCg -3'
miRNA:   3'- gucCGGGCucGCGC-UCUGGCUCUG--CG- -5'
15673 3' -60.7 NC_004065.1 + 224038 0.73 0.419522
Target:  5'- gUAGGCCCGAGgGCcauGAcGGCCG-GugGCc -3'
miRNA:   3'- -GUCCGGGCUCgCG---CU-CUGGCuCugCG- -5'
15673 3' -60.7 NC_004065.1 + 225135 0.68 0.698864
Target:  5'- uGGGCUCGGGaCGCGGacgcuccuccuggguGACCGAGcCGa -3'
miRNA:   3'- gUCCGGGCUC-GCGCU---------------CUGGCUCuGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.