miRNA display CGI


Results 21 - 40 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15673 3' -60.7 NC_004065.1 + 198374 0.69 0.676156
Target:  5'- gCGGGCCUGAcgcgGCGCGucGCCGAcaGCGUg -3'
miRNA:   3'- -GUCCGGGCU----CGCGCucUGGCUc-UGCG- -5'
15673 3' -60.7 NC_004065.1 + 196646 0.68 0.713851
Target:  5'- aAGGCCaucgcguucgGGGCGCGcuucGACCGuccGGCGCg -3'
miRNA:   3'- gUCCGGg---------CUCGCGCu---CUGGCu--CUGCG- -5'
15673 3' -60.7 NC_004065.1 + 195074 0.68 0.713851
Target:  5'- gCAGGUCgggCGAGCGCGcggcgcAGACCcccaGGGGCGUc -3'
miRNA:   3'- -GUCCGG---GCUCGCGC------UCUGG----CUCUGCG- -5'
15673 3' -60.7 NC_004065.1 + 195045 0.69 0.663774
Target:  5'- gGGGCUCGAcgaucgcccuGCGCGAcccggucucgggacGGCgCGAGACGUu -3'
miRNA:   3'- gUCCGGGCU----------CGCGCU--------------CUG-GCUCUGCG- -5'
15673 3' -60.7 NC_004065.1 + 194721 0.66 0.830278
Target:  5'- gAGGCgUGAGCGgcggcgccgcCGugcccaaccgcuucGACCGAGGCGCc -3'
miRNA:   3'- gUCCGgGCUCGC----------GCu-------------CUGGCUCUGCG- -5'
15673 3' -60.7 NC_004065.1 + 193930 0.66 0.802762
Target:  5'- --cGCCUGAGuCGCGcGGACCaGAgGugGCa -3'
miRNA:   3'- gucCGGGCUC-GCGC-UCUGG-CU-CugCG- -5'
15673 3' -60.7 NC_004065.1 + 186846 0.66 0.811029
Target:  5'- gAGGauCCCGAGUGUGAGAUguuuaucaUGguGGACGCc -3'
miRNA:   3'- gUCC--GGGCUCGCGCUCUG--------GC--UCUGCG- -5'
15673 3' -60.7 NC_004065.1 + 185844 0.72 0.479328
Target:  5'- uCGGGUCCGGGgGCGuGA--GGGACGCg -3'
miRNA:   3'- -GUCCGGGCUCgCGCuCUggCUCUGCG- -5'
15673 3' -60.7 NC_004065.1 + 185510 0.66 0.834952
Target:  5'- cCGGGCCaGGGuCGUccGAGGCCuGGGcCGCa -3'
miRNA:   3'- -GUCCGGgCUC-GCG--CUCUGG-CUCuGCG- -5'
15673 3' -60.7 NC_004065.1 + 182609 0.66 0.811029
Target:  5'- gCGGGUCCGAuGCGCuucAGuaGCCGGGAagguCGCu -3'
miRNA:   3'- -GUCCGGGCU-CGCGc--UC--UGGCUCU----GCG- -5'
15673 3' -60.7 NC_004065.1 + 174971 0.71 0.561747
Target:  5'- gAGaGCCaCGGGCGaGAGACCGAGcgGCGg -3'
miRNA:   3'- gUC-CGG-GCUCGCgCUCUGGCUC--UGCg -5'
15673 3' -60.7 NC_004065.1 + 168590 0.69 0.685646
Target:  5'- -cGGCCCGAGUGCuAGcuGCgGAGGCa- -3'
miRNA:   3'- guCCGGGCUCGCGcUC--UGgCUCUGcg -5'
15673 3' -60.7 NC_004065.1 + 168261 0.69 0.676156
Target:  5'- -cGGCCCGAGaCGCGucGACgGAGcuguCGUc -3'
miRNA:   3'- guCCGGGCUC-GCGCu-CUGgCUCu---GCG- -5'
15673 3' -60.7 NC_004065.1 + 165876 0.67 0.785829
Target:  5'- -cGGuCCCGAagGCGAGGCCGc-ACGCg -3'
miRNA:   3'- guCC-GGGCUcgCGCUCUGGCucUGCG- -5'
15673 3' -60.7 NC_004065.1 + 162721 0.68 0.741508
Target:  5'- -uGGCCgGccGCGCGAGgccuucGCCGAaGCGCa -3'
miRNA:   3'- guCCGGgCu-CGCGCUC------UGGCUcUGCG- -5'
15673 3' -60.7 NC_004065.1 + 161780 0.66 0.802762
Target:  5'- gCAGGCUC-AG-GUGAGGCgGcGGACGCa -3'
miRNA:   3'- -GUCCGGGcUCgCGCUCUGgC-UCUGCG- -5'
15673 3' -60.7 NC_004065.1 + 161027 0.66 0.802762
Target:  5'- -cGGCaUCGAcGUGCaGGGGCCGGucGACGCu -3'
miRNA:   3'- guCCG-GGCU-CGCG-CUCUGGCU--CUGCG- -5'
15673 3' -60.7 NC_004065.1 + 150134 0.71 0.57118
Target:  5'- uCGGGUUCGGGCGCGcAGGacauCCGAGA-GCu -3'
miRNA:   3'- -GUCCGGGCUCGCGC-UCU----GGCUCUgCG- -5'
15673 3' -60.7 NC_004065.1 + 147974 0.68 0.729604
Target:  5'- aGGGCCCGuAGCGCGGcGuccagcucauccgaGCCG-GugGUg -3'
miRNA:   3'- gUCCGGGC-UCGCGCU-C--------------UGGCuCugCG- -5'
15673 3' -60.7 NC_004065.1 + 146021 0.69 0.676156
Target:  5'- gAGcGCCCGcgaccGGCGCGcGACgCGAucGGCGCa -3'
miRNA:   3'- gUC-CGGGC-----UCGCGCuCUG-GCU--CUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.