miRNA display CGI


Results 41 - 60 of 146 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15673 3' -60.7 NC_004065.1 + 143751 0.67 0.79436
Target:  5'- aCAGcauCCCGGGCGaagugGGGAUCcAGACGCa -3'
miRNA:   3'- -GUCc--GGGCUCGCg----CUCUGGcUCUGCG- -5'
15673 3' -60.7 NC_004065.1 + 143121 0.69 0.685646
Target:  5'- --cGCcgCCGAGgGCGAGACCGGcGcCGCg -3'
miRNA:   3'- gucCG--GGCUCgCGCUCUGGCU-CuGCG- -5'
15673 3' -60.7 NC_004065.1 + 141812 0.66 0.811029
Target:  5'- gCAGGuCuuGcGCGCGAcGCCGaAGAgCGCg -3'
miRNA:   3'- -GUCC-GggCuCGCGCUcUGGC-UCU-GCG- -5'
15673 3' -60.7 NC_004065.1 + 141717 0.77 0.276124
Target:  5'- -cGGCCacgugucccaGGGCGCaGAGGuCCGAGACGCa -3'
miRNA:   3'- guCCGGg---------CUCGCG-CUCU-GGCUCUGCG- -5'
15673 3' -60.7 NC_004065.1 + 141372 0.66 0.811029
Target:  5'- gAGGaaCCUGAGCGCGucggcgauGCCGcugaAGGCGCg -3'
miRNA:   3'- gUCC--GGGCUCGCGCuc------UGGC----UCUGCG- -5'
15673 3' -60.7 NC_004065.1 + 139408 0.69 0.647528
Target:  5'- -cGGCCCGcGCGCagcgaGAGugCGcugcucaaGGACGCu -3'
miRNA:   3'- guCCGGGCuCGCG-----CUCugGC--------UCUGCG- -5'
15673 3' -60.7 NC_004065.1 + 135647 0.66 0.842611
Target:  5'- aCGGGgUCGGGCGCG--GCCGGcGCGUc -3'
miRNA:   3'- -GUCCgGGCUCGCGCucUGGCUcUGCG- -5'
15673 3' -60.7 NC_004065.1 + 135561 0.72 0.470521
Target:  5'- -cGGCUCGAGCGggccgaaguCGGcGGCgGAGACGCg -3'
miRNA:   3'- guCCGGGCUCGC---------GCU-CUGgCUCUGCG- -5'
15673 3' -60.7 NC_004065.1 + 135339 0.66 0.802762
Target:  5'- aAGGUCagGGGcCGCGAGAUCaaggccAGACGCg -3'
miRNA:   3'- gUCCGGg-CUC-GCGCUCUGGc-----UCUGCG- -5'
15673 3' -60.7 NC_004065.1 + 135092 0.75 0.342448
Target:  5'- aGGGCCCGucuccGgGgGAGGCCGAGAgGUg -3'
miRNA:   3'- gUCCGGGCu----CgCgCUCUGGCUCUgCG- -5'
15673 3' -60.7 NC_004065.1 + 133688 0.69 0.65709
Target:  5'- aAGGCCggcauCGAGCaCGAGACCcuggaAGACGUg -3'
miRNA:   3'- gUCCGG-----GCUCGcGCUCUGGc----UCUGCG- -5'
15673 3' -60.7 NC_004065.1 + 130900 0.67 0.79436
Target:  5'- uGGGCaugaCGGGCGUG-GGCUGccuggcggcGGGCGCg -3'
miRNA:   3'- gUCCGg---GCUCGCGCuCUGGC---------UCUGCG- -5'
15673 3' -60.7 NC_004065.1 + 130282 0.67 0.777177
Target:  5'- uCAGGgUgGAGCGCGAGGaggacgaCGAGAgGg -3'
miRNA:   3'- -GUCCgGgCUCGCGCUCUg------GCUCUgCg -5'
15673 3' -60.7 NC_004065.1 + 127433 0.74 0.387442
Target:  5'- aGGGCCCgccugaaaGAGCGagagaGAGACCGAGAgGg -3'
miRNA:   3'- gUCCGGG--------CUCGCg----CUCUGGCUCUgCg -5'
15673 3' -60.7 NC_004065.1 + 127233 0.66 0.842611
Target:  5'- gAGGaUCGGGCGCGGuGGCgGGGAUGa -3'
miRNA:   3'- gUCCgGGCUCGCGCU-CUGgCUCUGCg -5'
15673 3' -60.7 NC_004065.1 + 127076 0.67 0.777177
Target:  5'- aCAGGUCCcucGAGUGgccacCGGGGCCGGGAuccccaccuCGCg -3'
miRNA:   3'- -GUCCGGG---CUCGC-----GCUCUGGCUCU---------GCG- -5'
15673 3' -60.7 NC_004065.1 + 126243 0.66 0.82713
Target:  5'- uCAcGCCCGuGCgGCG-GAUCGAGcCGCc -3'
miRNA:   3'- -GUcCGGGCuCG-CGCuCUGGCUCuGCG- -5'
15673 3' -60.7 NC_004065.1 + 126061 0.66 0.842611
Target:  5'- aCAGGaucCCCcAGCGCaucucgcacGCCGAGGCGCu -3'
miRNA:   3'- -GUCC---GGGcUCGCGcuc------UGGCUCUGCG- -5'
15673 3' -60.7 NC_004065.1 + 125754 0.67 0.768412
Target:  5'- aGGGCCCG-GCGuCGuGuaucGCgGGGugGCa -3'
miRNA:   3'- gUCCGGGCuCGC-GCuC----UGgCUCugCG- -5'
15673 3' -60.7 NC_004065.1 + 124019 0.7 0.609236
Target:  5'- aCAGGCgaCCGGcGCGCGGcGcACCGAGGUGCu -3'
miRNA:   3'- -GUCCG--GGCU-CGCGCU-C-UGGCUCUGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.