Results 61 - 80 of 146 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15673 | 3' | -60.7 | NC_004065.1 | + | 123720 | 0.72 | 0.497178 |
Target: 5'- gGGGCUCGcAGCGCGGGucGCUGGgcGACGUg -3' miRNA: 3'- gUCCGGGC-UCGCGCUC--UGGCU--CUGCG- -5' |
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15673 | 3' | -60.7 | NC_004065.1 | + | 122737 | 0.67 | 0.785829 |
Target: 5'- --cGCCC-AGCuGCGGGucgugcgcuACCGGGACGCc -3' miRNA: 3'- gucCGGGcUCG-CGCUC---------UGGCUCUGCG- -5' |
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15673 | 3' | -60.7 | NC_004065.1 | + | 122619 | 0.69 | 0.65709 |
Target: 5'- gAGGUCCcAGUcCGAGACgGAGACGa -3' miRNA: 3'- gUCCGGGcUCGcGCUCUGgCUCUGCg -5' |
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15673 | 3' | -60.7 | NC_004065.1 | + | 121566 | 0.69 | 0.65709 |
Target: 5'- gAGcCCCGAGUGCGGGGCCGcuGCcCg -3' miRNA: 3'- gUCcGGGCUCGCGCUCUGGCucUGcG- -5' |
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15673 | 3' | -60.7 | NC_004065.1 | + | 120682 | 0.66 | 0.842611 |
Target: 5'- aGGGCCCGGaCGaggucgGAGAgCGAGAagaaCGCg -3' miRNA: 3'- gUCCGGGCUcGCg-----CUCUgGCUCU----GCG- -5' |
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15673 | 3' | -60.7 | NC_004065.1 | + | 120566 | 0.7 | 0.590154 |
Target: 5'- -cGGCgCGAGCggGCGGGACCuccGGCGCc -3' miRNA: 3'- guCCGgGCUCG--CGCUCUGGcu-CUGCG- -5' |
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15673 | 3' | -60.7 | NC_004065.1 | + | 118995 | 0.67 | 0.750569 |
Target: 5'- aAGGCaccCCGAGCcgacuGCGAGACCugccgGAcacGACGCu -3' miRNA: 3'- gUCCG---GGCUCG-----CGCUCUGG-----CU---CUGCG- -5' |
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15673 | 3' | -60.7 | NC_004065.1 | + | 117400 | 0.66 | 0.834952 |
Target: 5'- -cGGCCgCGcGCGCuGGGCuCGcGGCGCg -3' miRNA: 3'- guCCGG-GCuCGCGcUCUG-GCuCUGCG- -5' |
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15673 | 3' | -60.7 | NC_004065.1 | + | 113942 | 0.75 | 0.335325 |
Target: 5'- gCGGcGCUCGGGgGCuGGGACgGAGACGCc -3' miRNA: 3'- -GUC-CGGGCUCgCG-CUCUGgCUCUGCG- -5' |
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15673 | 3' | -60.7 | NC_004065.1 | + | 113874 | 0.66 | 0.811029 |
Target: 5'- gGGGUCCGcuuccAGCcccuugGCGGGACCGcGGGCGa -3' miRNA: 3'- gUCCGGGC-----UCG------CGCUCUGGC-UCUGCg -5' |
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15673 | 3' | -60.7 | NC_004065.1 | + | 113653 | 0.67 | 0.785829 |
Target: 5'- -uGGCCaCGAcGuCGCGAGggaGCCGcAGGCGUu -3' miRNA: 3'- guCCGG-GCU-C-GCGCUC---UGGC-UCUGCG- -5' |
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15673 | 3' | -60.7 | NC_004065.1 | + | 113381 | 0.71 | 0.533724 |
Target: 5'- --cGCUgGGGCGCGGGAUCGAGcUGCu -3' miRNA: 3'- gucCGGgCUCGCGCUCUGGCUCuGCG- -5' |
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15673 | 3' | -60.7 | NC_004065.1 | + | 113265 | 0.67 | 0.785829 |
Target: 5'- gAGGCgau-GCGCGcucacgugccGACCGAGACGCu -3' miRNA: 3'- gUCCGggcuCGCGCu---------CUGGCUCUGCG- -5' |
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15673 | 3' | -60.7 | NC_004065.1 | + | 112891 | 0.74 | 0.375069 |
Target: 5'- cCAGGCCCGucuccguccggaucaGGUGCGAcACCaGGGCGCg -3' miRNA: 3'- -GUCCGGGC---------------UCGCGCUcUGGcUCUGCG- -5' |
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15673 | 3' | -60.7 | NC_004065.1 | + | 111647 | 0.67 | 0.756859 |
Target: 5'- -cGGCCCGGucGCGCaugaccuggcugguGAGAgCGGGAgCGCc -3' miRNA: 3'- guCCGGGCU--CGCG--------------CUCUgGCUCU-GCG- -5' |
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15673 | 3' | -60.7 | NC_004065.1 | + | 110832 | 0.72 | 0.506214 |
Target: 5'- cCAGGCaCC-AGUGCGGGGCgCGGGcCGCc -3' miRNA: 3'- -GUCCG-GGcUCGCGCUCUG-GCUCuGCG- -5' |
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15673 | 3' | -60.7 | NC_004065.1 | + | 110561 | 0.78 | 0.241493 |
Target: 5'- -cGGCCaGAGCuGCGAGACCGuGACGg -3' miRNA: 3'- guCCGGgCUCG-CGCUCUGGCuCUGCg -5' |
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15673 | 3' | -60.7 | NC_004065.1 | + | 110538 | 0.69 | 0.647528 |
Target: 5'- -nGGCCgGGucGCGCGAGuACaCGGGACGa -3' miRNA: 3'- guCCGGgCU--CGCGCUC-UG-GCUCUGCg -5' |
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15673 | 3' | -60.7 | NC_004065.1 | + | 110155 | 0.66 | 0.834952 |
Target: 5'- -cGGCggaCGAGC-CGGGACCccccGACGCg -3' miRNA: 3'- guCCGg--GCUCGcGCUCUGGcu--CUGCG- -5' |
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15673 | 3' | -60.7 | NC_004065.1 | + | 109461 | 0.69 | 0.637954 |
Target: 5'- ----gCCGAGCaggaaGAGGCCGAGGCGCc -3' miRNA: 3'- guccgGGCUCGcg---CUCUGGCUCUGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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