Results 81 - 100 of 146 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15673 | 3' | -60.7 | NC_004065.1 | + | 108997 | 0.68 | 0.713851 |
Target: 5'- uGGGCuuGAagacccGCGUGAGGgCGAcGCGCg -3' miRNA: 3'- gUCCGggCU------CGCGCUCUgGCUcUGCG- -5' |
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15673 | 3' | -60.7 | NC_004065.1 | + | 108154 | 0.79 | 0.205748 |
Target: 5'- gAGGUCCugucGAGCGuCGAcauGACCGAGACGCu -3' miRNA: 3'- gUCCGGG----CUCGC-GCU---CUGGCUCUGCG- -5' |
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15673 | 3' | -60.7 | NC_004065.1 | + | 103999 | 0.69 | 0.685645 |
Target: 5'- gAGGCCCcgccGCGCGA-ACCGAcgccgaaggaGGCGCg -3' miRNA: 3'- gUCCGGGcu--CGCGCUcUGGCU----------CUGCG- -5' |
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15673 | 3' | -60.7 | NC_004065.1 | + | 103011 | 0.73 | 0.427791 |
Target: 5'- uUAGGUCCGAGCGCGgcacgucgaaAGACaucauGACGCu -3' miRNA: 3'- -GUCCGGGCUCGCGC----------UCUGgcu--CUGCG- -5' |
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15673 | 3' | -60.7 | NC_004065.1 | + | 99423 | 0.67 | 0.75954 |
Target: 5'- gGGGCCCGAGCGgcaGAcGCCGccucgacaucGCGCg -3' miRNA: 3'- gUCCGGGCUCGCg--CUcUGGCuc--------UGCG- -5' |
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15673 | 3' | -60.7 | NC_004065.1 | + | 98800 | 0.66 | 0.830278 |
Target: 5'- uUAGGCCgGgugccAGCGUG-GGCCGGacggauuuauuccuuGACGCa -3' miRNA: 3'- -GUCCGGgC-----UCGCGCuCUGGCU---------------CUGCG- -5' |
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15673 | 3' | -60.7 | NC_004065.1 | + | 93680 | 0.73 | 0.453161 |
Target: 5'- gGGGaUCCGGGUG-GGGugCGGGGCGCu -3' miRNA: 3'- gUCC-GGGCUCGCgCUCugGCUCUGCG- -5' |
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15673 | 3' | -60.7 | NC_004065.1 | + | 92517 | 0.66 | 0.811029 |
Target: 5'- -uGGCCCGGugccucgcgcGCGCGuacGGGCgGgcGGGCGCg -3' miRNA: 3'- guCCGGGCU----------CGCGC---UCUGgC--UCUGCG- -5' |
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15673 | 3' | -60.7 | NC_004065.1 | + | 92343 | 0.67 | 0.763101 |
Target: 5'- cCGGGCUCGGagcugcuggcgcaacGCGCGGcccuCCGAGcGCGCg -3' miRNA: 3'- -GUCCGGGCU---------------CGCGCUcu--GGCUC-UGCG- -5' |
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15673 | 3' | -60.7 | NC_004065.1 | + | 90151 | 0.69 | 0.685645 |
Target: 5'- gAGGUCCGGGCaCGGGAgggaCGAGAUcaGCg -3' miRNA: 3'- gUCCGGGCUCGcGCUCUg---GCUCUG--CG- -5' |
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15673 | 3' | -60.7 | NC_004065.1 | + | 88960 | 0.7 | 0.609236 |
Target: 5'- aCGGGCUCGcGCGUGAugguGGCCaccuGGGGCGCc -3' miRNA: 3'- -GUCCGGGCuCGCGCU----CUGG----CUCUGCG- -5' |
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15673 | 3' | -60.7 | NC_004065.1 | + | 88564 | 0.68 | 0.723141 |
Target: 5'- uCAGGCgCGA---CGAGGCCGAgGACGUg -3' miRNA: 3'- -GUCCGgGCUcgcGCUCUGGCU-CUGCG- -5' |
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15673 | 3' | -60.7 | NC_004065.1 | + | 86990 | 0.67 | 0.768412 |
Target: 5'- aAGGgCCGAggcgGCGUcgGGGGCCGGGGCa- -3' miRNA: 3'- gUCCgGGCU----CGCG--CUCUGGCUCUGcg -5' |
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15673 | 3' | -60.7 | NC_004065.1 | + | 85760 | 0.7 | 0.617844 |
Target: 5'- -cGGCCCGGGUcucucGaccugacauaaguCGGcGACCGAGGCGCg -3' miRNA: 3'- guCCGGGCUCG-----C-------------GCU-CUGGCUCUGCG- -5' |
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15673 | 3' | -60.7 | NC_004065.1 | + | 83448 | 0.69 | 0.676156 |
Target: 5'- gGGGaCUCGAGaGCGGGccGCCGGGAgCGCc -3' miRNA: 3'- gUCC-GGGCUCgCGCUC--UGGCUCU-GCG- -5' |
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15673 | 3' | -60.7 | NC_004065.1 | + | 81652 | 0.68 | 0.695096 |
Target: 5'- aCGGGCCCGGGUGgGcaAGuACUGccugcaGGACGCc -3' miRNA: 3'- -GUCCGGGCUCGCgC--UC-UGGC------UCUGCG- -5' |
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15673 | 3' | -60.7 | NC_004065.1 | + | 78922 | 0.67 | 0.79436 |
Target: 5'- uCGGGCgCCGcGGCGCc-GGCCGcuGCGCu -3' miRNA: 3'- -GUCCG-GGC-UCGCGcuCUGGCucUGCG- -5' |
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15673 | 3' | -60.7 | NC_004065.1 | + | 77543 | 0.68 | 0.732363 |
Target: 5'- aAGuaCCG-GCGCGcGACCGAGggcucguucGCGCg -3' miRNA: 3'- gUCcgGGCuCGCGCuCUGGCUC---------UGCG- -5' |
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15673 | 3' | -60.7 | NC_004065.1 | + | 77082 | 0.67 | 0.785829 |
Target: 5'- cCAGGCCCuguacauCGCGAGcGCCGcGACGg -3' miRNA: 3'- -GUCCGGGcuc----GCGCUC-UGGCuCUGCg -5' |
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15673 | 3' | -60.7 | NC_004065.1 | + | 74831 | 0.75 | 0.349679 |
Target: 5'- --cGCCCGGGU-CGGGACCGAGGgGCg -3' miRNA: 3'- gucCGGGCUCGcGCUCUGGCUCUgCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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