miRNA display CGI


Results 41 - 60 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15673 3' -60.7 NC_004065.1 + 211340 0.73 0.444612
Target:  5'- aAGGCCUGAGCc---GACCGAGGCGg -3'
miRNA:   3'- gUCCGGGCUCGcgcuCUGGCUCUGCg -5'
15673 3' -60.7 NC_004065.1 + 103011 0.73 0.427791
Target:  5'- uUAGGUCCGAGCGCGgcacgucgaaAGACaucauGACGCu -3'
miRNA:   3'- -GUCCGGGCUCGCGC----------UCUGgcu--CUGCG- -5'
15673 3' -60.7 NC_004065.1 + 224038 0.73 0.419522
Target:  5'- gUAGGCCCGAGgGCcauGAcGGCCG-GugGCc -3'
miRNA:   3'- -GUCCGGGCUCgCG---CU-CUGGCuCugCG- -5'
15673 3' -60.7 NC_004065.1 + 112891 0.74 0.375069
Target:  5'- cCAGGCCCGucuccguccggaucaGGUGCGAcACCaGGGCGCg -3'
miRNA:   3'- -GUCCGGGC---------------UCGCGCUcUGGcUCUGCG- -5'
15673 3' -60.7 NC_004065.1 + 74831 0.75 0.349679
Target:  5'- --cGCCCGGGU-CGGGACCGAGGgGCg -3'
miRNA:   3'- gucCGGGCUCGcGCUCUGGCUCUgCG- -5'
15673 3' -60.7 NC_004065.1 + 229265 0.7 0.590154
Target:  5'- aAGG-UCGAGCGCGAacCCGcGACGCg -3'
miRNA:   3'- gUCCgGGCUCGCGCUcuGGCuCUGCG- -5'
15673 3' -60.7 NC_004065.1 + 88960 0.7 0.609236
Target:  5'- aCGGGCUCGcGCGUGAugguGGCCaccuGGGGCGCc -3'
miRNA:   3'- -GUCCGGGCuCGCGCU----CUGG----CUCUGCG- -5'
15673 3' -60.7 NC_004065.1 + 225135 0.68 0.698864
Target:  5'- uGGGCUCGGGaCGCGGacgcuccuccuggguGACCGAGcCGa -3'
miRNA:   3'- gUCCGGGCUC-GCGCU---------------CUGGCUCuGCg -5'
15673 3' -60.7 NC_004065.1 + 143121 0.69 0.685646
Target:  5'- --cGCcgCCGAGgGCGAGACCGGcGcCGCg -3'
miRNA:   3'- gucCG--GGCUCgCGCUCUGGCU-CuGCG- -5'
15673 3' -60.7 NC_004065.1 + 168590 0.69 0.685646
Target:  5'- -cGGCCCGAGUGCuAGcuGCgGAGGCa- -3'
miRNA:   3'- guCCGGGCUCGCGcUC--UGgCUCUGcg -5'
15673 3' -60.7 NC_004065.1 + 50830 0.69 0.685646
Target:  5'- aCGGGCCCGAagagaaCGUGAacGCCG-GGCGCg -3'
miRNA:   3'- -GUCCGGGCUc-----GCGCUc-UGGCuCUGCG- -5'
15673 3' -60.7 NC_004065.1 + 74147 0.69 0.676156
Target:  5'- gGGuGCCCGGGC-CGAGAaccCCGcAGGCGg -3'
miRNA:   3'- gUC-CGGGCUCGcGCUCU---GGC-UCUGCg -5'
15673 3' -60.7 NC_004065.1 + 133688 0.69 0.65709
Target:  5'- aAGGCCggcauCGAGCaCGAGACCcuggaAGACGUg -3'
miRNA:   3'- gUCCGG-----GCUCGcGCUCUGGc----UCUGCG- -5'
15673 3' -60.7 NC_004065.1 + 122619 0.69 0.65709
Target:  5'- gAGGUCCcAGUcCGAGACgGAGACGa -3'
miRNA:   3'- gUCCGGGcUCGcGCUCUGgCUCUGCg -5'
15673 3' -60.7 NC_004065.1 + 47300 0.69 0.656135
Target:  5'- -uGGCCCcGGCGUcgcccguGAGGCCGAucCGCg -3'
miRNA:   3'- guCCGGGcUCGCG-------CUCUGGCUcuGCG- -5'
15673 3' -60.7 NC_004065.1 + 139408 0.69 0.647528
Target:  5'- -cGGCCCGcGCGCagcgaGAGugCGcugcucaaGGACGCu -3'
miRNA:   3'- guCCGGGCuCGCG-----CUCugGC--------UCUGCG- -5'
15673 3' -60.7 NC_004065.1 + 60684 0.69 0.647528
Target:  5'- -cGGCCCaccAGgGCGAGACgGugauGGCGCu -3'
miRNA:   3'- guCCGGGc--UCgCGCUCUGgCu---CUGCG- -5'
15673 3' -60.7 NC_004065.1 + 31700 0.7 0.628377
Target:  5'- uCGGuGCCCGAGCGU---GCCGAuGACGg -3'
miRNA:   3'- -GUC-CGGGCUCGCGcucUGGCU-CUGCg -5'
15673 3' -60.7 NC_004065.1 + 85760 0.7 0.617844
Target:  5'- -cGGCCCGGGUcucucGaccugacauaaguCGGcGACCGAGGCGCg -3'
miRNA:   3'- guCCGGGCUCG-----C-------------GCU-CUGGCUCUGCG- -5'
15673 3' -60.7 NC_004065.1 + 41490 0.7 0.609236
Target:  5'- --cGCCgGGGCGuCGGGACgGGGAgCGCg -3'
miRNA:   3'- gucCGGgCUCGC-GCUCUGgCUCU-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.