miRNA display CGI


Results 61 - 80 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15673 3' -60.7 NC_004065.1 + 31700 0.7 0.628377
Target:  5'- uCGGuGCCCGAGCGU---GCCGAuGACGg -3'
miRNA:   3'- -GUC-CGGGCUCGCGcucUGGCU-CUGCg -5'
15673 3' -60.7 NC_004065.1 + 60684 0.69 0.647528
Target:  5'- -cGGCCCaccAGgGCGAGACgGugauGGCGCu -3'
miRNA:   3'- guCCGGGc--UCgCGCUCUGgCu---CUGCG- -5'
15673 3' -60.7 NC_004065.1 + 139408 0.69 0.647528
Target:  5'- -cGGCCCGcGCGCagcgaGAGugCGcugcucaaGGACGCu -3'
miRNA:   3'- guCCGGGCuCGCG-----CUCugGC--------UCUGCG- -5'
15673 3' -60.7 NC_004065.1 + 47300 0.69 0.656135
Target:  5'- -uGGCCCcGGCGUcgcccguGAGGCCGAucCGCg -3'
miRNA:   3'- guCCGGGcUCGCG-------CUCUGGCUcuGCG- -5'
15673 3' -60.7 NC_004065.1 + 122619 0.69 0.65709
Target:  5'- gAGGUCCcAGUcCGAGACgGAGACGa -3'
miRNA:   3'- gUCCGGGcUCGcGCUCUGgCUCUGCg -5'
15673 3' -60.7 NC_004065.1 + 93680 0.73 0.453161
Target:  5'- gGGGaUCCGGGUG-GGGugCGGGGCGCu -3'
miRNA:   3'- gUCC-GGGCUCGCgCUCugGCUCUGCG- -5'
15673 3' -60.7 NC_004065.1 + 199176 0.72 0.470521
Target:  5'- uCAGaacGCCCGgcGGCGCGcGAUCGAGAgGCu -3'
miRNA:   3'- -GUC---CGGGC--UCGCGCuCUGGCUCUgCG- -5'
15673 3' -60.7 NC_004065.1 + 135561 0.72 0.470521
Target:  5'- -cGGCUCGAGCGggccgaaguCGGcGGCgGAGACGCg -3'
miRNA:   3'- guCCGGGCUCGC---------GCU-CUGgCUCUGCG- -5'
15673 3' -60.7 NC_004065.1 + 123720 0.72 0.497178
Target:  5'- gGGGCUCGcAGCGCGGGucGCUGGgcGACGUg -3'
miRNA:   3'- gUCCGGGC-UCGCGCUC--UGGCU--CUGCG- -5'
15673 3' -60.7 NC_004065.1 + 113381 0.71 0.533724
Target:  5'- --cGCUgGGGCGCGGGAUCGAGcUGCu -3'
miRNA:   3'- gucCGGgCUCGCGCUCUGGCUCuGCG- -5'
15673 3' -60.7 NC_004065.1 + 63879 0.71 0.533724
Target:  5'- uCAGGCUCGAcaCG-GGGAUCGAGAUGCc -3'
miRNA:   3'- -GUCCGGGCUc-GCgCUCUGGCUCUGCG- -5'
15673 3' -60.7 NC_004065.1 + 24526 0.74 0.39531
Target:  5'- gGGGCCgCGAGcCGUGAGcucACCGAGugcCGCa -3'
miRNA:   3'- gUCCGG-GCUC-GCGCUC---UGGCUCu--GCG- -5'
15673 3' -60.7 NC_004065.1 + 127433 0.74 0.387442
Target:  5'- aGGGCCCgccugaaaGAGCGagagaGAGACCGAGAgGg -3'
miRNA:   3'- gUCCGGG--------CUCGCg----CUCUGGCUCUgCg -5'
15673 3' -60.7 NC_004065.1 + 32549 0.74 0.364465
Target:  5'- uCGGGCuCCGA-CGagGAGACCGAGgACGCg -3'
miRNA:   3'- -GUCCG-GGCUcGCg-CUCUGGCUC-UGCG- -5'
15673 3' -60.7 NC_004065.1 + 135092 0.75 0.342448
Target:  5'- aGGGCCCGucuccGgGgGAGGCCGAGAgGUg -3'
miRNA:   3'- gUCCGGGCu----CgCgCUCUGGCUCUgCG- -5'
15673 3' -60.7 NC_004065.1 + 62116 0.76 0.294879
Target:  5'- gCAGGCCCuuccGCGCGGGGCgCGAcagcGGCGCg -3'
miRNA:   3'- -GUCCGGGcu--CGCGCUCUG-GCU----CUGCG- -5'
15673 3' -60.7 NC_004065.1 + 141717 0.77 0.276124
Target:  5'- -cGGCCacgugucccaGGGCGCaGAGGuCCGAGACGCa -3'
miRNA:   3'- guCCGGg---------CUCGCG-CUCU-GGCUCUGCG- -5'
15673 3' -60.7 NC_004065.1 + 110561 0.78 0.241493
Target:  5'- -cGGCCaGAGCuGCGAGACCGuGACGg -3'
miRNA:   3'- guCCGGgCUCG-CGCUCUGGCuCUGCg -5'
15673 3' -60.7 NC_004065.1 + 108154 0.79 0.205748
Target:  5'- gAGGUCCugucGAGCGuCGAcauGACCGAGACGCu -3'
miRNA:   3'- gUCCGGG----CUCGC-GCU---CUGGCUCUGCG- -5'
15673 3' -60.7 NC_004065.1 + 126061 0.66 0.842611
Target:  5'- aCAGGaucCCCcAGCGCaucucgcacGCCGAGGCGCu -3'
miRNA:   3'- -GUCC---GGGcUCGCGcuc------UGGCUCUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.