Results 81 - 100 of 146 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15673 | 3' | -60.7 | NC_004065.1 | + | 81652 | 0.68 | 0.695096 |
Target: 5'- aCGGGCCCGGGUGgGcaAGuACUGccugcaGGACGCc -3' miRNA: 3'- -GUCCGGGCUCGCgC--UC-UGGC------UCUGCG- -5' |
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15673 | 3' | -60.7 | NC_004065.1 | + | 65015 | 0.68 | 0.7045 |
Target: 5'- gCAGGUCgGAGCGCuccuuGGCCGAcagcgaGCGCg -3' miRNA: 3'- -GUCCGGgCUCGCGcu---CUGGCUc-----UGCG- -5' |
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15673 | 3' | -60.7 | NC_004065.1 | + | 124019 | 0.7 | 0.609236 |
Target: 5'- aCAGGCgaCCGGcGCGCGGcGcACCGAGGUGCu -3' miRNA: 3'- -GUCCG--GGCU-CGCGCU-C-UGGCUCUGCG- -5' |
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15673 | 3' | -60.7 | NC_004065.1 | + | 31387 | 0.7 | 0.580651 |
Target: 5'- --uGCCCGAGuCG-GAGACgGAGACGg -3' miRNA: 3'- gucCGGGCUC-GCgCUCUGgCUCUGCg -5' |
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15673 | 3' | -60.7 | NC_004065.1 | + | 108154 | 0.79 | 0.205748 |
Target: 5'- gAGGUCCugucGAGCGuCGAcauGACCGAGACGCu -3' miRNA: 3'- gUCCGGG----CUCGC-GCU---CUGGCUCUGCG- -5' |
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15673 | 3' | -60.7 | NC_004065.1 | + | 110561 | 0.78 | 0.241493 |
Target: 5'- -cGGCCaGAGCuGCGAGACCGuGACGg -3' miRNA: 3'- guCCGGgCUCG-CGCUCUGGCuCUGCg -5' |
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15673 | 3' | -60.7 | NC_004065.1 | + | 141717 | 0.77 | 0.276124 |
Target: 5'- -cGGCCacgugucccaGGGCGCaGAGGuCCGAGACGCa -3' miRNA: 3'- guCCGGg---------CUCGCG-CUCU-GGCUCUGCG- -5' |
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15673 | 3' | -60.7 | NC_004065.1 | + | 62116 | 0.76 | 0.294879 |
Target: 5'- gCAGGCCCuuccGCGCGGGGCgCGAcagcGGCGCg -3' miRNA: 3'- -GUCCGGGcu--CGCGCUCUG-GCU----CUGCG- -5' |
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15673 | 3' | -60.7 | NC_004065.1 | + | 135092 | 0.75 | 0.342448 |
Target: 5'- aGGGCCCGucuccGgGgGAGGCCGAGAgGUg -3' miRNA: 3'- gUCCGGGCu----CgCgCUCUGGCUCUgCG- -5' |
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15673 | 3' | -60.7 | NC_004065.1 | + | 32549 | 0.74 | 0.364465 |
Target: 5'- uCGGGCuCCGA-CGagGAGACCGAGgACGCg -3' miRNA: 3'- -GUCCG-GGCUcGCg-CUCUGGCUC-UGCG- -5' |
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15673 | 3' | -60.7 | NC_004065.1 | + | 127433 | 0.74 | 0.387442 |
Target: 5'- aGGGCCCgccugaaaGAGCGagagaGAGACCGAGAgGg -3' miRNA: 3'- gUCCGGG--------CUCGCg----CUCUGGCUCUgCg -5' |
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15673 | 3' | -60.7 | NC_004065.1 | + | 24526 | 0.74 | 0.39531 |
Target: 5'- gGGGCCgCGAGcCGUGAGcucACCGAGugcCGCa -3' miRNA: 3'- gUCCGG-GCUC-GCGCUC---UGGCUCu--GCG- -5' |
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15673 | 3' | -60.7 | NC_004065.1 | + | 93680 | 0.73 | 0.453161 |
Target: 5'- gGGGaUCCGGGUG-GGGugCGGGGCGCu -3' miRNA: 3'- gUCC-GGGCUCGCgCUCugGCUCUGCG- -5' |
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15673 | 3' | -60.7 | NC_004065.1 | + | 199176 | 0.72 | 0.470521 |
Target: 5'- uCAGaacGCCCGgcGGCGCGcGAUCGAGAgGCu -3' miRNA: 3'- -GUC---CGGGC--UCGCGCuCUGGCUCUgCG- -5' |
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15673 | 3' | -60.7 | NC_004065.1 | + | 135561 | 0.72 | 0.470521 |
Target: 5'- -cGGCUCGAGCGggccgaaguCGGcGGCgGAGACGCg -3' miRNA: 3'- guCCGGGCUCGC---------GCU-CUGgCUCUGCG- -5' |
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15673 | 3' | -60.7 | NC_004065.1 | + | 123720 | 0.72 | 0.497178 |
Target: 5'- gGGGCUCGcAGCGCGGGucGCUGGgcGACGUg -3' miRNA: 3'- gUCCGGGC-UCGCGCUC--UGGCU--CUGCG- -5' |
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15673 | 3' | -60.7 | NC_004065.1 | + | 113381 | 0.71 | 0.533724 |
Target: 5'- --cGCUgGGGCGCGGGAUCGAGcUGCu -3' miRNA: 3'- gucCGGgCUCGCGCUCUGGCUCuGCG- -5' |
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15673 | 3' | -60.7 | NC_004065.1 | + | 63879 | 0.71 | 0.533724 |
Target: 5'- uCAGGCUCGAcaCG-GGGAUCGAGAUGCc -3' miRNA: 3'- -GUCCGGGCUc-GCgCUCUGGCUCUGCG- -5' |
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15673 | 3' | -60.7 | NC_004065.1 | + | 174971 | 0.71 | 0.561747 |
Target: 5'- gAGaGCCaCGGGCGaGAGACCGAGcgGCGg -3' miRNA: 3'- gUC-CGG-GCUCGCgCUCUGGCUC--UGCg -5' |
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15673 | 3' | -60.7 | NC_004065.1 | + | 150134 | 0.71 | 0.57118 |
Target: 5'- uCGGGUUCGGGCGCGcAGGacauCCGAGA-GCu -3' miRNA: 3'- -GUCCGGGCUCGCGC-UCU----GGCUCUgCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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