miRNA display CGI


Results 101 - 120 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15673 3' -60.7 NC_004065.1 + 32549 0.74 0.364465
Target:  5'- uCGGGCuCCGA-CGagGAGACCGAGgACGCg -3'
miRNA:   3'- -GUCCG-GGCUcGCg-CUCUGGCUC-UGCG- -5'
15673 3' -60.7 NC_004065.1 + 135092 0.75 0.342448
Target:  5'- aGGGCCCGucuccGgGgGAGGCCGAGAgGUg -3'
miRNA:   3'- gUCCGGGCu----CgCgCUCUGGCUCUgCG- -5'
15673 3' -60.7 NC_004065.1 + 62116 0.76 0.294879
Target:  5'- gCAGGCCCuuccGCGCGGGGCgCGAcagcGGCGCg -3'
miRNA:   3'- -GUCCGGGcu--CGCGCUCUG-GCU----CUGCG- -5'
15673 3' -60.7 NC_004065.1 + 141717 0.77 0.276124
Target:  5'- -cGGCCacgugucccaGGGCGCaGAGGuCCGAGACGCa -3'
miRNA:   3'- guCCGGg---------CUCGCG-CUCU-GGCUCUGCG- -5'
15673 3' -60.7 NC_004065.1 + 110561 0.78 0.241493
Target:  5'- -cGGCCaGAGCuGCGAGACCGuGACGg -3'
miRNA:   3'- guCCGGgCUCG-CGCUCUGGCuCUGCg -5'
15673 3' -60.7 NC_004065.1 + 108154 0.79 0.205748
Target:  5'- gAGGUCCugucGAGCGuCGAcauGACCGAGACGCu -3'
miRNA:   3'- gUCCGGG----CUCGC-GCU---CUGGCUCUGCG- -5'
15673 3' -60.7 NC_004065.1 + 113381 0.71 0.533724
Target:  5'- --cGCUgGGGCGCGGGAUCGAGcUGCu -3'
miRNA:   3'- gucCGGgCUCGCGCUCUGGCUCuGCG- -5'
15673 3' -60.7 NC_004065.1 + 63879 0.71 0.533724
Target:  5'- uCAGGCUCGAcaCG-GGGAUCGAGAUGCc -3'
miRNA:   3'- -GUCCGGGCUc-GCgCUCUGGCUCUGCG- -5'
15673 3' -60.7 NC_004065.1 + 195045 0.69 0.663774
Target:  5'- gGGGCUCGAcgaucgcccuGCGCGAcccggucucgggacGGCgCGAGACGUu -3'
miRNA:   3'- gUCCGGGCU----------CGCGCU--------------CUG-GCUCUGCG- -5'
15673 3' -60.7 NC_004065.1 + 27720 0.69 0.65709
Target:  5'- gCAGGaaCCCGAgcucGCGCGuGaugcGCgGAGACGCg -3'
miRNA:   3'- -GUCC--GGGCU----CGCGCuC----UGgCUCUGCG- -5'
15673 3' -60.7 NC_004065.1 + 121566 0.69 0.65709
Target:  5'- gAGcCCCGAGUGCGGGGCCGcuGCcCg -3'
miRNA:   3'- gUCcGGGCUCGCGCUCUGGCucUGcG- -5'
15673 3' -60.7 NC_004065.1 + 110538 0.69 0.647528
Target:  5'- -nGGCCgGGucGCGCGAGuACaCGGGACGa -3'
miRNA:   3'- guCCGGgCU--CGCGCUC-UG-GCUCUGCg -5'
15673 3' -60.7 NC_004065.1 + 109461 0.69 0.637954
Target:  5'- ----gCCGAGCaggaaGAGGCCGAGGCGCc -3'
miRNA:   3'- guccgGGCUCGcg---CUCUGGCUCUGCG- -5'
15673 3' -60.7 NC_004065.1 + 45775 0.7 0.628377
Target:  5'- -cGGCgCCGGGUgGCGuAGACCGuccGACGUg -3'
miRNA:   3'- guCCG-GGCUCG-CGC-UCUGGCu--CUGCG- -5'
15673 3' -60.7 NC_004065.1 + 198472 0.7 0.628377
Target:  5'- aCAGGCCgGGGgGCcu-GCCG-GACGCg -3'
miRNA:   3'- -GUCCGGgCUCgCGcucUGGCuCUGCG- -5'
15673 3' -60.7 NC_004065.1 + 63764 0.7 0.618802
Target:  5'- -cGGCCgCGAGgGCGAGGCCauc-CGCa -3'
miRNA:   3'- guCCGG-GCUCgCGCUCUGGcucuGCG- -5'
15673 3' -60.7 NC_004065.1 + 124019 0.7 0.609236
Target:  5'- aCAGGCgaCCGGcGCGCGGcGcACCGAGGUGCu -3'
miRNA:   3'- -GUCCG--GGCU-CGCGCU-C-UGGCUCUGCG- -5'
15673 3' -60.7 NC_004065.1 + 31387 0.7 0.580651
Target:  5'- --uGCCCGAGuCG-GAGACgGAGACGg -3'
miRNA:   3'- gucCGGGCUC-GCgCUCUGgCUCUGCg -5'
15673 3' -60.7 NC_004065.1 + 150134 0.71 0.57118
Target:  5'- uCGGGUUCGGGCGCGcAGGacauCCGAGA-GCu -3'
miRNA:   3'- -GUCCGGGCUCGCGC-UCU----GGCUCUgCG- -5'
15673 3' -60.7 NC_004065.1 + 174971 0.71 0.561747
Target:  5'- gAGaGCCaCGGGCGaGAGACCGAGcgGCGg -3'
miRNA:   3'- gUC-CGG-GCUCGCgCUCUGGCUC--UGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.