miRNA display CGI


Results 121 - 140 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15673 3' -60.7 NC_004065.1 + 108154 0.79 0.205748
Target:  5'- gAGGUCCugucGAGCGuCGAcauGACCGAGACGCu -3'
miRNA:   3'- gUCCGGG----CUCGC-GCU---CUGGCUCUGCG- -5'
15673 3' -60.7 NC_004065.1 + 124019 0.7 0.609236
Target:  5'- aCAGGCgaCCGGcGCGCGGcGcACCGAGGUGCu -3'
miRNA:   3'- -GUCCG--GGCU-CGCGCU-C-UGGCUCUGCG- -5'
15673 3' -60.7 NC_004065.1 + 63764 0.7 0.618802
Target:  5'- -cGGCCgCGAGgGCGAGGCCauc-CGCa -3'
miRNA:   3'- guCCGG-GCUCgCGCUCUGGcucuGCG- -5'
15673 3' -60.7 NC_004065.1 + 23251 0.68 0.7045
Target:  5'- -uGGCUCGAGUGUGGuuucuguucgcGAUCGGGGCGa -3'
miRNA:   3'- guCCGGGCUCGCGCU-----------CUGGCUCUGCg -5'
15673 3' -60.7 NC_004065.1 + 65015 0.68 0.7045
Target:  5'- gCAGGUCgGAGCGCuccuuGGCCGAcagcgaGCGCg -3'
miRNA:   3'- -GUCCGGgCUCGCGcu---CUGGCUc-----UGCG- -5'
15673 3' -60.7 NC_004065.1 + 81652 0.68 0.695096
Target:  5'- aCGGGCCCGGGUGgGcaAGuACUGccugcaGGACGCc -3'
miRNA:   3'- -GUCCGGGCUCGCgC--UC-UGGC------UCUGCG- -5'
15673 3' -60.7 NC_004065.1 + 103999 0.69 0.685645
Target:  5'- gAGGCCCcgccGCGCGA-ACCGAcgccgaaggaGGCGCg -3'
miRNA:   3'- gUCCGGGcu--CGCGCUcUGGCU----------CUGCG- -5'
15673 3' -60.7 NC_004065.1 + 90151 0.69 0.685645
Target:  5'- gAGGUCCGGGCaCGGGAgggaCGAGAUcaGCg -3'
miRNA:   3'- gUCCGGGCUCGcGCUCUg---GCUCUG--CG- -5'
15673 3' -60.7 NC_004065.1 + 168261 0.69 0.676156
Target:  5'- -cGGCCCGAGaCGCGucGACgGAGcuguCGUc -3'
miRNA:   3'- guCCGGGCUC-GCGCu-CUGgCUCu---GCG- -5'
15673 3' -60.7 NC_004065.1 + 48039 0.69 0.676156
Target:  5'- -uGGCCCGAG---GAGAUCGAGGgGCu -3'
miRNA:   3'- guCCGGGCUCgcgCUCUGGCUCUgCG- -5'
15673 3' -60.7 NC_004065.1 + 146021 0.69 0.676156
Target:  5'- gAGcGCCCGcgaccGGCGCGcGACgCGAucGGCGCa -3'
miRNA:   3'- gUC-CGGGC-----UCGCGCuCUG-GCU--CUGCG- -5'
15673 3' -60.7 NC_004065.1 + 198374 0.69 0.676156
Target:  5'- gCGGGCCUGAcgcgGCGCGucGCCGAcaGCGUg -3'
miRNA:   3'- -GUCCGGGCU----CGCGCucUGGCUc-UGCG- -5'
15673 3' -60.7 NC_004065.1 + 83448 0.69 0.676156
Target:  5'- gGGGaCUCGAGaGCGGGccGCCGGGAgCGCc -3'
miRNA:   3'- gUCC-GGGCUCgCGCUC--UGGCUCU-GCG- -5'
15673 3' -60.7 NC_004065.1 + 195045 0.69 0.663774
Target:  5'- gGGGCUCGAcgaucgcccuGCGCGAcccggucucgggacGGCgCGAGACGUu -3'
miRNA:   3'- gUCCGGGCU----------CGCGCU--------------CUG-GCUCUGCG- -5'
15673 3' -60.7 NC_004065.1 + 27720 0.69 0.65709
Target:  5'- gCAGGaaCCCGAgcucGCGCGuGaugcGCgGAGACGCg -3'
miRNA:   3'- -GUCC--GGGCU----CGCGCuC----UGgCUCUGCG- -5'
15673 3' -60.7 NC_004065.1 + 121566 0.69 0.65709
Target:  5'- gAGcCCCGAGUGCGGGGCCGcuGCcCg -3'
miRNA:   3'- gUCcGGGCUCGCGCUCUGGCucUGcG- -5'
15673 3' -60.7 NC_004065.1 + 110538 0.69 0.647528
Target:  5'- -nGGCCgGGucGCGCGAGuACaCGGGACGa -3'
miRNA:   3'- guCCGGgCU--CGCGCUC-UG-GCUCUGCg -5'
15673 3' -60.7 NC_004065.1 + 109461 0.69 0.637954
Target:  5'- ----gCCGAGCaggaaGAGGCCGAGGCGCc -3'
miRNA:   3'- guccgGGCUCGcg---CUCUGGCUCUGCG- -5'
15673 3' -60.7 NC_004065.1 + 45775 0.7 0.628377
Target:  5'- -cGGCgCCGGGUgGCGuAGACCGuccGACGUg -3'
miRNA:   3'- guCCG-GGCUCG-CGC-UCUGGCu--CUGCG- -5'
15673 3' -60.7 NC_004065.1 + 198472 0.7 0.628377
Target:  5'- aCAGGCCgGGGgGCcu-GCCG-GACGCg -3'
miRNA:   3'- -GUCCGGgCUCgCGcucUGGCuCUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.