miRNA display CGI


Results 41 - 60 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15673 3' -60.7 NC_004065.1 + 103999 0.69 0.685645
Target:  5'- gAGGCCCcgccGCGCGA-ACCGAcgccgaaggaGGCGCg -3'
miRNA:   3'- gUCCGGGcu--CGCGCUcUGGCU----------CUGCG- -5'
15673 3' -60.7 NC_004065.1 + 31387 0.7 0.580651
Target:  5'- --uGCCCGAGuCG-GAGACgGAGACGg -3'
miRNA:   3'- gucCGGGCUC-GCgCUCUGgCUCUGCg -5'
15673 3' -60.7 NC_004065.1 + 110561 0.78 0.241493
Target:  5'- -cGGCCaGAGCuGCGAGACCGuGACGg -3'
miRNA:   3'- guCCGGgCUCG-CGCUCUGGCuCUGCg -5'
15673 3' -60.7 NC_004065.1 + 90151 0.69 0.685645
Target:  5'- gAGGUCCGGGCaCGGGAgggaCGAGAUcaGCg -3'
miRNA:   3'- gUCCGGGCUCGcGCUCUg---GCUCUG--CG- -5'
15673 3' -60.7 NC_004065.1 + 108154 0.79 0.205748
Target:  5'- gAGGUCCugucGAGCGuCGAcauGACCGAGACGCu -3'
miRNA:   3'- gUCCGGG----CUCGC-GCU---CUGGCUCUGCG- -5'
15673 3' -60.7 NC_004065.1 + 77082 0.67 0.785829
Target:  5'- cCAGGCCCuguacauCGCGAGcGCCGcGACGg -3'
miRNA:   3'- -GUCCGGGcuc----GCGCUC-UGGCuCUGCg -5'
15673 3' -60.7 NC_004065.1 + 62116 0.76 0.294879
Target:  5'- gCAGGCCCuuccGCGCGGGGCgCGAcagcGGCGCg -3'
miRNA:   3'- -GUCCGGGcu--CGCGCUCUG-GCU----CUGCG- -5'
15673 3' -60.7 NC_004065.1 + 86990 0.67 0.768412
Target:  5'- aAGGgCCGAggcgGCGUcgGGGGCCGGGGCa- -3'
miRNA:   3'- gUCCgGGCU----CGCG--CUCUGGCUCUGcg -5'
15673 3' -60.7 NC_004065.1 + 40719 0.67 0.758647
Target:  5'- uUAGaGUCCGAGCuCGAGAgCGAgggagauaauaguGACGCc -3'
miRNA:   3'- -GUC-CGGGCUCGcGCUCUgGCU-------------CUGCG- -5'
15673 3' -60.7 NC_004065.1 + 64573 0.68 0.740597
Target:  5'- -uGGUCCGAGUccaGC-AGAcccuguuggauguCCGAGACGCg -3'
miRNA:   3'- guCCGGGCUCG---CGcUCU-------------GGCUCUGCG- -5'
15673 3' -60.7 NC_004065.1 + 59564 0.68 0.731444
Target:  5'- -cGGUCUGAGCuauaaaaGCGAGACUGucuGAuCGCg -3'
miRNA:   3'- guCCGGGCUCG-------CGCUCUGGCu--CU-GCG- -5'
15673 3' -60.7 NC_004065.1 + 108997 0.68 0.713851
Target:  5'- uGGGCuuGAagacccGCGUGAGGgCGAcGCGCg -3'
miRNA:   3'- gUCCGggCU------CGCGCUCUgGCUcUGCG- -5'
15673 3' -60.7 NC_004065.1 + 65015 0.68 0.7045
Target:  5'- gCAGGUCgGAGCGCuccuuGGCCGAcagcgaGCGCg -3'
miRNA:   3'- -GUCCGGgCUCGCGcu---CUGGCUc-----UGCG- -5'
15673 3' -60.7 NC_004065.1 + 146021 0.69 0.676156
Target:  5'- gAGcGCCCGcgaccGGCGCGcGACgCGAucGGCGCa -3'
miRNA:   3'- gUC-CGGGC-----UCGCGCuCUG-GCU--CUGCG- -5'
15673 3' -60.7 NC_004065.1 + 195045 0.69 0.663774
Target:  5'- gGGGCUCGAcgaucgcccuGCGCGAcccggucucgggacGGCgCGAGACGUu -3'
miRNA:   3'- gUCCGGGCU----------CGCGCU--------------CUG-GCUCUGCG- -5'
15673 3' -60.7 NC_004065.1 + 109461 0.69 0.637954
Target:  5'- ----gCCGAGCaggaaGAGGCCGAGGCGCc -3'
miRNA:   3'- guccgGGCUCGcg---CUCUGGCUCUGCG- -5'
15673 3' -60.7 NC_004065.1 + 63764 0.7 0.618802
Target:  5'- -cGGCCgCGAGgGCGAGGCCauc-CGCa -3'
miRNA:   3'- guCCGG-GCUCgCGCUCUGGcucuGCG- -5'
15673 3' -60.7 NC_004065.1 + 63879 0.71 0.533724
Target:  5'- uCAGGCUCGAcaCG-GGGAUCGAGAUGCc -3'
miRNA:   3'- -GUCCGGGCUc-GCgCUCUGGCUCUGCG- -5'
15673 3' -60.7 NC_004065.1 + 135561 0.72 0.470521
Target:  5'- -cGGCUCGAGCGggccgaaguCGGcGGCgGAGACGCg -3'
miRNA:   3'- guCCGGGCUCGC---------GCU-CUGgCUCUGCG- -5'
15673 3' -60.7 NC_004065.1 + 127433 0.74 0.387442
Target:  5'- aGGGCCCgccugaaaGAGCGagagaGAGACCGAGAgGg -3'
miRNA:   3'- gUCCGGG--------CUCGCg----CUCUGGCUCUgCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.