miRNA display CGI


Results 61 - 80 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15673 3' -60.7 NC_004065.1 + 262 0.68 0.7045
Target:  5'- gGGGCCCGcGCGCacucaGAcGGCCGGGGgGg -3'
miRNA:   3'- gUCCGGGCuCGCG-----CU-CUGGCUCUgCg -5'
15673 3' -60.7 NC_004065.1 + 88564 0.68 0.723141
Target:  5'- uCAGGCgCGA---CGAGGCCGAgGACGUg -3'
miRNA:   3'- -GUCCGgGCUcgcGCUCUGGCU-CUGCG- -5'
15673 3' -60.7 NC_004065.1 + 45775 0.7 0.628377
Target:  5'- -cGGCgCCGGGUgGCGuAGACCGuccGACGUg -3'
miRNA:   3'- guCCG-GGCUCG-CGC-UCUGGCu--CUGCG- -5'
15673 3' -60.7 NC_004065.1 + 121566 0.69 0.65709
Target:  5'- gAGcCCCGAGUGCGGGGCCGcuGCcCg -3'
miRNA:   3'- gUCcGGGCUCGCGCUCUGGCucUGcG- -5'
15673 3' -60.7 NC_004065.1 + 195045 0.69 0.663774
Target:  5'- gGGGCUCGAcgaucgcccuGCGCGAcccggucucgggacGGCgCGAGACGUu -3'
miRNA:   3'- gUCCGGGCU----------CGCGCU--------------CUG-GCUCUGCG- -5'
15673 3' -60.7 NC_004065.1 + 83448 0.69 0.676156
Target:  5'- gGGGaCUCGAGaGCGGGccGCCGGGAgCGCc -3'
miRNA:   3'- gUCC-GGGCUCgCGCUC--UGGCUCU-GCG- -5'
15673 3' -60.7 NC_004065.1 + 48039 0.69 0.676156
Target:  5'- -uGGCCCGAG---GAGAUCGAGGgGCu -3'
miRNA:   3'- guCCGGGCUCgcgCUCUGGCUCUgCG- -5'
15673 3' -60.7 NC_004065.1 + 168261 0.69 0.676156
Target:  5'- -cGGCCCGAGaCGCGucGACgGAGcuguCGUc -3'
miRNA:   3'- guCCGGGCUC-GCGCu-CUGgCUCu---GCG- -5'
15673 3' -60.7 NC_004065.1 + 103999 0.69 0.685645
Target:  5'- gAGGCCCcgccGCGCGA-ACCGAcgccgaaggaGGCGCg -3'
miRNA:   3'- gUCCGGGcu--CGCGCUcUGGCU----------CUGCG- -5'
15673 3' -60.7 NC_004065.1 + 81652 0.68 0.695096
Target:  5'- aCGGGCCCGGGUGgGcaAGuACUGccugcaGGACGCc -3'
miRNA:   3'- -GUCCGGGCUCGCgC--UC-UGGC------UCUGCG- -5'
15673 3' -60.7 NC_004065.1 + 120682 0.66 0.842611
Target:  5'- aGGGCCCGGaCGaggucgGAGAgCGAGAagaaCGCg -3'
miRNA:   3'- gUCCGGGCUcGCg-----CUCUgGCUCU----GCG- -5'
15673 3' -60.7 NC_004065.1 + 185510 0.66 0.834952
Target:  5'- cCGGGCCaGGGuCGUccGAGGCCuGGGcCGCa -3'
miRNA:   3'- -GUCCGGgCUC-GCG--CUCUGG-CUCuGCG- -5'
15673 3' -60.7 NC_004065.1 + 229295 0.68 0.732363
Target:  5'- -cGGUCaacuuucccuUGAGCGCugcggGAGGCCGAGuGCGCg -3'
miRNA:   3'- guCCGG----------GCUCGCG-----CUCUGGCUC-UGCG- -5'
15673 3' -60.7 NC_004065.1 + 162721 0.68 0.741508
Target:  5'- -uGGCCgGccGCGCGAGgccuucGCCGAaGCGCa -3'
miRNA:   3'- guCCGGgCu-CGCGCUC------UGGCUcUGCG- -5'
15673 3' -60.7 NC_004065.1 + 86990 0.67 0.768412
Target:  5'- aAGGgCCGAggcgGCGUcgGGGGCCGGGGCa- -3'
miRNA:   3'- gUCCgGGCU----CGCG--CUCUGGCUCUGcg -5'
15673 3' -60.7 NC_004065.1 + 77082 0.67 0.785829
Target:  5'- cCAGGCCCuguacauCGCGAGcGCCGcGACGg -3'
miRNA:   3'- -GUCCGGGcuc----GCGCUC-UGGCuCUGCg -5'
15673 3' -60.7 NC_004065.1 + 113265 0.67 0.785829
Target:  5'- gAGGCgau-GCGCGcucacgugccGACCGAGACGCu -3'
miRNA:   3'- gUCCGggcuCGCGCu---------CUGGCUCUGCG- -5'
15673 3' -60.7 NC_004065.1 + 143751 0.67 0.79436
Target:  5'- aCAGcauCCCGGGCGaagugGGGAUCcAGACGCa -3'
miRNA:   3'- -GUCc--GGGCUCGCg----CUCUGGcUCUGCG- -5'
15673 3' -60.7 NC_004065.1 + 113874 0.66 0.811029
Target:  5'- gGGGUCCGcuuccAGCcccuugGCGGGACCGcGGGCGa -3'
miRNA:   3'- gUCCGGGC-----UCG------CGCUCUGGC-UCUGCg -5'
15673 3' -60.7 NC_004065.1 + 5625 0.66 0.819154
Target:  5'- gAGGCUagcacaguuaCGAGCGCcaaGAGcuguACCG-GACGCg -3'
miRNA:   3'- gUCCGG----------GCUCGCG---CUC----UGGCuCUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.