Results 81 - 100 of 146 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15673 | 3' | -60.7 | NC_004065.1 | + | 162721 | 0.68 | 0.741508 |
Target: 5'- -uGGCCgGccGCGCGAGgccuucGCCGAaGCGCa -3' miRNA: 3'- guCCGGgCu-CGCGCUC------UGGCUcUGCG- -5' |
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15673 | 3' | -60.7 | NC_004065.1 | + | 185844 | 0.72 | 0.479328 |
Target: 5'- uCGGGUCCGGGgGCGuGA--GGGACGCg -3' miRNA: 3'- -GUCCGGGCUCgCGCuCUggCUCUGCG- -5' |
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15673 | 3' | -60.7 | NC_004065.1 | + | 186846 | 0.66 | 0.811029 |
Target: 5'- gAGGauCCCGAGUGUGAGAUguuuaucaUGguGGACGCc -3' miRNA: 3'- gUCC--GGGCUCGCGCUCUG--------GC--UCUGCG- -5' |
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15673 | 3' | -60.7 | NC_004065.1 | + | 92517 | 0.66 | 0.811029 |
Target: 5'- -uGGCCCGGugccucgcgcGCGCGuacGGGCgGgcGGGCGCg -3' miRNA: 3'- guCCGGGCU----------CGCGC---UCUGgC--UCUGCG- -5' |
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15673 | 3' | -60.7 | NC_004065.1 | + | 223901 | 0.66 | 0.819154 |
Target: 5'- --aGUCCGcuCGCGaAGGCCGAGACcaGCg -3' miRNA: 3'- gucCGGGCucGCGC-UCUGGCUCUG--CG- -5' |
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15673 | 3' | -60.7 | NC_004065.1 | + | 126243 | 0.66 | 0.82713 |
Target: 5'- uCAcGCCCGuGCgGCG-GAUCGAGcCGCc -3' miRNA: 3'- -GUcCGGGCuCG-CGCuCUGGCUCuGCG- -5' |
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15673 | 3' | -60.7 | NC_004065.1 | + | 120566 | 0.7 | 0.590154 |
Target: 5'- -cGGCgCGAGCggGCGGGACCuccGGCGCc -3' miRNA: 3'- guCCGgGCUCG--CGCUCUGGcu-CUGCG- -5' |
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15673 | 3' | -60.7 | NC_004065.1 | + | 98800 | 0.66 | 0.830278 |
Target: 5'- uUAGGCCgGgugccAGCGUG-GGCCGGacggauuuauuccuuGACGCa -3' miRNA: 3'- -GUCCGGgC-----UCGCGCuCUGGCU---------------CUGCG- -5' |
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15673 | 3' | -60.7 | NC_004065.1 | + | 61688 | 0.68 | 0.7045 |
Target: 5'- gGGGUCCGcAGCGCGucacGuCCGcGGCGUa -3' miRNA: 3'- gUCCGGGC-UCGCGCu---CuGGCuCUGCG- -5' |
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15673 | 3' | -60.7 | NC_004065.1 | + | 201668 | 0.68 | 0.703562 |
Target: 5'- -cGaGUCCGAgcguguaccaGCGCGAGGacaucuuUCGAGACGCg -3' miRNA: 3'- guC-CGGGCU----------CGCGCUCU-------GGCUCUGCG- -5' |
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15673 | 3' | -60.7 | NC_004065.1 | + | 225135 | 0.68 | 0.698864 |
Target: 5'- uGGGCUCGGGaCGCGGacgcuccuccuggguGACCGAGcCGa -3' miRNA: 3'- gUCCGGGCUC-GCGCU---------------CUGGCUCuGCg -5' |
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15673 | 3' | -60.7 | NC_004065.1 | + | 168590 | 0.69 | 0.685646 |
Target: 5'- -cGGCCCGAGUGCuAGcuGCgGAGGCa- -3' miRNA: 3'- guCCGGGCUCGCGcUC--UGgCUCUGcg -5' |
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15673 | 3' | -60.7 | NC_004065.1 | + | 66612 | 0.66 | 0.842611 |
Target: 5'- aCAGGauCCgGAGcCGCG-GGCUGcGGCGCu -3' miRNA: 3'- -GUCC--GGgCUC-GCGCuCUGGCuCUGCG- -5' |
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15673 | 3' | -60.7 | NC_004065.1 | + | 50280 | 0.66 | 0.842611 |
Target: 5'- uCGGGcCCCGAgaccgccguccGCGCGGcGAUCGcGAgGCa -3' miRNA: 3'- -GUCC-GGGCU-----------CGCGCU-CUGGCuCUgCG- -5' |
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15673 | 3' | -60.7 | NC_004065.1 | + | 143121 | 0.69 | 0.685646 |
Target: 5'- --cGCcgCCGAGgGCGAGACCGGcGcCGCg -3' miRNA: 3'- gucCG--GGCUCgCGCUCUGGCU-CuGCG- -5' |
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15673 | 3' | -60.7 | NC_004065.1 | + | 41685 | 0.66 | 0.842611 |
Target: 5'- uGGGgCUGAGCaucGCGAGggacGCgGAGACGg -3' miRNA: 3'- gUCCgGGCUCG---CGCUC----UGgCUCUGCg -5' |
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15673 | 3' | -60.7 | NC_004065.1 | + | 72099 | 0.66 | 0.84033 |
Target: 5'- -cGGCCUGAuCGCcAGACUGgacaggaggacgguGGACGCg -3' miRNA: 3'- guCCGGGCUcGCGcUCUGGC--------------UCUGCG- -5' |
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15673 | 3' | -60.7 | NC_004065.1 | + | 117400 | 0.66 | 0.834952 |
Target: 5'- -cGGCCgCGcGCGCuGGGCuCGcGGCGCg -3' miRNA: 3'- guCCGG-GCuCGCGcUCUG-GCuCUGCG- -5' |
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15673 | 3' | -60.7 | NC_004065.1 | + | 68911 | 0.66 | 0.834952 |
Target: 5'- gAGGUgacgCCGAGCGCGgAGAUCaAGaaguuGCGCg -3' miRNA: 3'- gUCCG----GGCUCGCGC-UCUGGcUC-----UGCG- -5' |
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15673 | 3' | -60.7 | NC_004065.1 | + | 225597 | 0.66 | 0.834952 |
Target: 5'- gAGGCCCGAGggucaGCGucAGGCCcgccGugGCc -3' miRNA: 3'- gUCCGGGCUCg----CGC--UCUGGcu--CugCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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