miRNA display CGI


Results 101 - 120 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15673 3' -60.7 NC_004065.1 + 186846 0.66 0.811029
Target:  5'- gAGGauCCCGAGUGUGAGAUguuuaucaUGguGGACGCc -3'
miRNA:   3'- gUCC--GGGCUCGCGCUCUG--------GC--UCUGCG- -5'
15673 3' -60.7 NC_004065.1 + 126243 0.66 0.82713
Target:  5'- uCAcGCCCGuGCgGCG-GAUCGAGcCGCc -3'
miRNA:   3'- -GUcCGGGCuCG-CGCuCUGGCUCuGCG- -5'
15673 3' -60.7 NC_004065.1 + 98800 0.66 0.830278
Target:  5'- uUAGGCCgGgugccAGCGUG-GGCCGGacggauuuauuccuuGACGCa -3'
miRNA:   3'- -GUCCGGgC-----UCGCGCuCUGGCU---------------CUGCG- -5'
15673 3' -60.7 NC_004065.1 + 66612 0.66 0.842611
Target:  5'- aCAGGauCCgGAGcCGCG-GGCUGcGGCGCu -3'
miRNA:   3'- -GUCC--GGgCUC-GCGCuCUGGCuCUGCG- -5'
15673 3' -60.7 NC_004065.1 + 50280 0.66 0.842611
Target:  5'- uCGGGcCCCGAgaccgccguccGCGCGGcGAUCGcGAgGCa -3'
miRNA:   3'- -GUCC-GGGCU-----------CGCGCU-CUGGCuCUgCG- -5'
15673 3' -60.7 NC_004065.1 + 225597 0.66 0.834952
Target:  5'- gAGGCCCGAGggucaGCGucAGGCCcgccGugGCc -3'
miRNA:   3'- gUCCGGGCUCg----CGC--UCUGGcu--CugCG- -5'
15673 3' -60.7 NC_004065.1 + 72099 0.66 0.84033
Target:  5'- -cGGCCUGAuCGCcAGACUGgacaggaggacgguGGACGCg -3'
miRNA:   3'- guCCGGGCUcGCGcUCUGGC--------------UCUGCG- -5'
15673 3' -60.7 NC_004065.1 + 135339 0.66 0.802762
Target:  5'- aAGGUCagGGGcCGCGAGAUCaaggccAGACGCg -3'
miRNA:   3'- gUCCGGg-CUC-GCGCUCUGGc-----UCUGCG- -5'
15673 3' -60.7 NC_004065.1 + 161027 0.66 0.802762
Target:  5'- -cGGCaUCGAcGUGCaGGGGCCGGucGACGCu -3'
miRNA:   3'- guCCG-GGCU-CGCG-CUCUGGCU--CUGCG- -5'
15673 3' -60.7 NC_004065.1 + 168590 0.69 0.685646
Target:  5'- -cGGCCCGAGUGCuAGcuGCgGAGGCa- -3'
miRNA:   3'- guCCGGGCUCGCGcUC--UGgCUCUGcg -5'
15673 3' -60.7 NC_004065.1 + 143121 0.69 0.685646
Target:  5'- --cGCcgCCGAGgGCGAGACCGGcGcCGCg -3'
miRNA:   3'- gucCG--GGCUCgCGCUCUGGCU-CuGCG- -5'
15673 3' -60.7 NC_004065.1 + 225135 0.68 0.698864
Target:  5'- uGGGCUCGGGaCGCGGacgcuccuccuggguGACCGAGcCGa -3'
miRNA:   3'- gUCCGGGCUC-GCGCU---------------CUGGCUCuGCg -5'
15673 3' -60.7 NC_004065.1 + 201668 0.68 0.703562
Target:  5'- -cGaGUCCGAgcguguaccaGCGCGAGGacaucuuUCGAGACGCg -3'
miRNA:   3'- guC-CGGGCU----------CGCGCUCU-------GGCUCUGCG- -5'
15673 3' -60.7 NC_004065.1 + 61688 0.68 0.7045
Target:  5'- gGGGUCCGcAGCGCGucacGuCCGcGGCGUa -3'
miRNA:   3'- gUCCGGGC-UCGCGCu---CuGGCuCUGCG- -5'
15673 3' -60.7 NC_004065.1 + 66108 0.67 0.785829
Target:  5'- --cGCUgGGGgGCGAcaucACCGAGGCGCu -3'
miRNA:   3'- gucCGGgCUCgCGCUc---UGGCUCUGCG- -5'
15673 3' -60.7 NC_004065.1 + 165876 0.67 0.785829
Target:  5'- -cGGuCCCGAagGCGAGGCCGc-ACGCg -3'
miRNA:   3'- guCC-GGGCUcgCGCUCUGGCucUGCG- -5'
15673 3' -60.7 NC_004065.1 + 30879 0.67 0.79436
Target:  5'- gCGGGUUCGAGCGCccgcaGGGCguCGGGGuCGCa -3'
miRNA:   3'- -GUCCGGGCUCGCGc----UCUG--GCUCU-GCG- -5'
15673 3' -60.7 NC_004065.1 + 74648 0.66 0.802762
Target:  5'- cCGGGUCUGAG-GUccGGACCGcGGCGCg -3'
miRNA:   3'- -GUCCGGGCUCgCGc-UCUGGCuCUGCG- -5'
15673 3' -60.7 NC_004065.1 + 27919 0.66 0.802762
Target:  5'- gCAGGaaCgCGAGCGCcgccGACaGAGACGCa -3'
miRNA:   3'- -GUCC--GgGCUCGCGcu--CUGgCUCUGCG- -5'
15673 3' -60.7 NC_004065.1 + 68911 0.66 0.834952
Target:  5'- gAGGUgacgCCGAGCGCGgAGAUCaAGaaguuGCGCg -3'
miRNA:   3'- gUCCG----GGCUCGCGC-UCUGGcUC-----UGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.