miRNA display CGI


Results 21 - 40 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15673 3' -60.7 NC_004065.1 + 5625 0.66 0.819154
Target:  5'- gAGGCUagcacaguuaCGAGCGCcaaGAGcuguACCG-GACGCg -3'
miRNA:   3'- gUCCGG----------GCUCGCG---CUC----UGGCuCUGCG- -5'
15673 3' -60.7 NC_004065.1 + 199277 0.66 0.819154
Target:  5'- --cGCCgGGGUgGCGAGAUgGAGAgGCc -3'
miRNA:   3'- gucCGGgCUCG-CGCUCUGgCUCUgCG- -5'
15673 3' -60.7 NC_004065.1 + 222984 0.66 0.816732
Target:  5'- uGGGuCCCGGGCGagGAGcuccugacgaucgaGCCGgugguaccGGACGCg -3'
miRNA:   3'- gUCC-GGGCUCGCg-CUC--------------UGGC--------UCUGCG- -5'
15673 3' -60.7 NC_004065.1 + 141372 0.66 0.811029
Target:  5'- gAGGaaCCUGAGCGCGucggcgauGCCGcugaAGGCGCg -3'
miRNA:   3'- gUCC--GGGCUCGCGCuc------UGGC----UCUGCG- -5'
15673 3' -60.7 NC_004065.1 + 113874 0.66 0.811029
Target:  5'- gGGGUCCGcuuccAGCcccuugGCGGGACCGcGGGCGa -3'
miRNA:   3'- gUCCGGGC-----UCG------CGCUCUGGC-UCUGCg -5'
15673 3' -60.7 NC_004065.1 + 141812 0.66 0.811029
Target:  5'- gCAGGuCuuGcGCGCGAcGCCGaAGAgCGCg -3'
miRNA:   3'- -GUCC-GggCuCGCGCUcUGGC-UCU-GCG- -5'
15673 3' -60.7 NC_004065.1 + 92517 0.66 0.811029
Target:  5'- -uGGCCCGGugccucgcgcGCGCGuacGGGCgGgcGGGCGCg -3'
miRNA:   3'- guCCGGGCU----------CGCGC---UCUGgC--UCUGCG- -5'
15673 3' -60.7 NC_004065.1 + 186846 0.66 0.811029
Target:  5'- gAGGauCCCGAGUGUGAGAUguuuaucaUGguGGACGCc -3'
miRNA:   3'- gUCC--GGGCUCGCGCUCUG--------GC--UCUGCG- -5'
15673 3' -60.7 NC_004065.1 + 182609 0.66 0.811029
Target:  5'- gCGGGUCCGAuGCGCuucAGuaGCCGGGAagguCGCu -3'
miRNA:   3'- -GUCCGGGCU-CGCGc--UC--UGGCUCU----GCG- -5'
15673 3' -60.7 NC_004065.1 + 223870 0.66 0.810209
Target:  5'- -cGGCCCG-GCcaucucgGCcGGAUCGAGAUGUa -3'
miRNA:   3'- guCCGGGCuCG-------CGcUCUGGCUCUGCG- -5'
15673 3' -60.7 NC_004065.1 + 161780 0.66 0.802762
Target:  5'- gCAGGCUC-AG-GUGAGGCgGcGGACGCa -3'
miRNA:   3'- -GUCCGGGcUCgCGCUCUGgC-UCUGCG- -5'
15673 3' -60.7 NC_004065.1 + 27919 0.66 0.802762
Target:  5'- gCAGGaaCgCGAGCGCcgccGACaGAGACGCa -3'
miRNA:   3'- -GUCC--GgGCUCGCGcu--CUGgCUCUGCG- -5'
15673 3' -60.7 NC_004065.1 + 74648 0.66 0.802762
Target:  5'- cCGGGUCUGAG-GUccGGACCGcGGCGCg -3'
miRNA:   3'- -GUCCGGGCUCgCGc-UCUGGCuCUGCG- -5'
15673 3' -60.7 NC_004065.1 + 135339 0.66 0.802762
Target:  5'- aAGGUCagGGGcCGCGAGAUCaaggccAGACGCg -3'
miRNA:   3'- gUCCGGg-CUC-GCGCUCUGGc-----UCUGCG- -5'
15673 3' -60.7 NC_004065.1 + 193930 0.66 0.802762
Target:  5'- --cGCCUGAGuCGCGcGGACCaGAgGugGCa -3'
miRNA:   3'- gucCGGGCUC-GCGC-UCUGG-CU-CugCG- -5'
15673 3' -60.7 NC_004065.1 + 161027 0.66 0.802762
Target:  5'- -cGGCaUCGAcGUGCaGGGGCCGGucGACGCu -3'
miRNA:   3'- guCCG-GGCU-CGCG-CUCUGGCU--CUGCG- -5'
15673 3' -60.7 NC_004065.1 + 30879 0.67 0.79436
Target:  5'- gCGGGUUCGAGCGCccgcaGGGCguCGGGGuCGCa -3'
miRNA:   3'- -GUCCGGGCUCGCGc----UCUG--GCUCU-GCG- -5'
15673 3' -60.7 NC_004065.1 + 143751 0.67 0.79436
Target:  5'- aCAGcauCCCGGGCGaagugGGGAUCcAGACGCa -3'
miRNA:   3'- -GUCc--GGGCUCGCg----CUCUGGcUCUGCG- -5'
15673 3' -60.7 NC_004065.1 + 17811 0.67 0.79436
Target:  5'- uCGGaGCCCGAGCaaGGGGaaCGAG-CGCg -3'
miRNA:   3'- -GUC-CGGGCUCGcgCUCUg-GCUCuGCG- -5'
15673 3' -60.7 NC_004065.1 + 78922 0.67 0.79436
Target:  5'- uCGGGCgCCGcGGCGCc-GGCCGcuGCGCu -3'
miRNA:   3'- -GUCCG-GGC-UCGCGcuCUGGCucUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.