miRNA display CGI


Results 21 - 40 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15673 5' -55.8 NC_004065.1 + 45139 0.68 0.919568
Target:  5'- -uGCCUCCGCGAac-GGag-GCGUCCu -3'
miRNA:   3'- ucUGGAGGCGCUacaUCgcaCGCAGG- -5'
15673 5' -55.8 NC_004065.1 + 544 0.68 0.919568
Target:  5'- -aGCUUCCGCGAcg-AGCG-GCGcCCg -3'
miRNA:   3'- ucUGGAGGCGCUacaUCGCaCGCaGG- -5'
15673 5' -55.8 NC_004065.1 + 73683 0.68 0.924912
Target:  5'- -aACCUCUGUG-UGUGGUGUGgGUUUu -3'
miRNA:   3'- ucUGGAGGCGCuACAUCGCACgCAGG- -5'
15673 5' -55.8 NC_004065.1 + 222721 0.68 0.924912
Target:  5'- cGACCUCCcCGucugcGUAuCGUGCGUCg -3'
miRNA:   3'- uCUGGAGGcGCua---CAUcGCACGCAGg -5'
15673 5' -55.8 NC_004065.1 + 226642 0.68 0.924912
Target:  5'- cGACCUCCGCGcucuccgaGUGgcucgaGGCGagGUGUCa -3'
miRNA:   3'- uCUGGAGGCGC--------UACa-----UCGCa-CGCAGg -5'
15673 5' -55.8 NC_004065.1 + 52554 0.67 0.930033
Target:  5'- gGGACa---GCGAUGgagAGUGUGCG-CCg -3'
miRNA:   3'- -UCUGgaggCGCUACa--UCGCACGCaGG- -5'
15673 5' -55.8 NC_004065.1 + 43758 0.67 0.930033
Target:  5'- cGGAUCUCCGUcucuccaaguGAUGUaucGGCG-GCG-CCg -3'
miRNA:   3'- -UCUGGAGGCG----------CUACA---UCGCaCGCaGG- -5'
15673 5' -55.8 NC_004065.1 + 107598 0.67 0.930033
Target:  5'- cGGCCgacuaCGCGGacacgAGCGUGUGUCUg -3'
miRNA:   3'- uCUGGag---GCGCUaca--UCGCACGCAGG- -5'
15673 5' -55.8 NC_004065.1 + 99187 0.67 0.930033
Target:  5'- -cACCUCCucGCGGUaGUGguuacGCGUGUGUCUc -3'
miRNA:   3'- ucUGGAGG--CGCUA-CAU-----CGCACGCAGG- -5'
15673 5' -55.8 NC_004065.1 + 147997 0.67 0.933484
Target:  5'- cGGugUuggCCGUGGUcucccugagggcccGUAGCGcgGCGUCCa -3'
miRNA:   3'- -UCugGa--GGCGCUA--------------CAUCGCa-CGCAGG- -5'
15673 5' -55.8 NC_004065.1 + 99697 0.67 0.93493
Target:  5'- cGGGCgaggCgCGCGAUGUcgaGGCG-GCGUCUg -3'
miRNA:   3'- -UCUGga--G-GCGCUACA---UCGCaCGCAGG- -5'
15673 5' -55.8 NC_004065.1 + 124891 0.67 0.939604
Target:  5'- -uGCgCUCCuCGAUGU-GCGccGCGUCCa -3'
miRNA:   3'- ucUG-GAGGcGCUACAuCGCa-CGCAGG- -5'
15673 5' -55.8 NC_004065.1 + 61704 0.67 0.939604
Target:  5'- -cACgUCCGCGgcGUAGCG-GCGgaugcgagCCa -3'
miRNA:   3'- ucUGgAGGCGCuaCAUCGCaCGCa-------GG- -5'
15673 5' -55.8 NC_004065.1 + 131219 0.67 0.941411
Target:  5'- cAGACCUCCGaggcgaacauguugcCGAUG-GGgGUGcCGUCg -3'
miRNA:   3'- -UCUGGAGGC---------------GCUACaUCgCAC-GCAGg -5'
15673 5' -55.8 NC_004065.1 + 106894 0.67 0.942744
Target:  5'- -cGCgUCCGUGGugaacaguaacuucUGUAGCaggGCGUCCg -3'
miRNA:   3'- ucUGgAGGCGCU--------------ACAUCGca-CGCAGG- -5'
15673 5' -55.8 NC_004065.1 + 185432 0.67 0.944056
Target:  5'- -cACCUCaGUGAggaacgguguuUGUggaAGCGUGUGUCCu -3'
miRNA:   3'- ucUGGAGgCGCU-----------ACA---UCGCACGCAGG- -5'
15673 5' -55.8 NC_004065.1 + 172226 0.67 0.944056
Target:  5'- cGACgaUCUGC-AUGUGGaCGUGCGUgCg -3'
miRNA:   3'- uCUGg-AGGCGcUACAUC-GCACGCAgG- -5'
15673 5' -55.8 NC_004065.1 + 136813 0.67 0.944056
Target:  5'- cGGCUgcgUCCcCGAcaGUGGCGUGUGUCUc -3'
miRNA:   3'- uCUGG---AGGcGCUa-CAUCGCACGCAGG- -5'
15673 5' -55.8 NC_004065.1 + 171910 0.67 0.944056
Target:  5'- gGGGCCaaCGUGAauUGUAGCGUGaCG-CUa -3'
miRNA:   3'- -UCUGGagGCGCU--ACAUCGCAC-GCaGG- -5'
15673 5' -55.8 NC_004065.1 + 101502 0.67 0.948288
Target:  5'- aGGugUUCguacaacuCGCGA-GUAGCGUcgGCGUCUa -3'
miRNA:   3'- -UCugGAG--------GCGCUaCAUCGCA--CGCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.