miRNA display CGI


Results 41 - 60 of 60 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15673 5' -55.8 NC_004065.1 + 136813 0.67 0.944056
Target:  5'- cGGCUgcgUCCcCGAcaGUGGCGUGUGUCUc -3'
miRNA:   3'- uCUGG---AGGcGCUa-CAUCGCACGCAGG- -5'
15673 5' -55.8 NC_004065.1 + 138566 0.7 0.854211
Target:  5'- gAGGCCUCgcaCGCGAUcagGGCc-GCGUCCa -3'
miRNA:   3'- -UCUGGAG---GCGCUAca-UCGcaCGCAGG- -5'
15673 5' -55.8 NC_004065.1 + 139146 0.74 0.625625
Target:  5'- uGGACCUCgcuaagaGCGAUGUcGaCGUGaCGUCCu -3'
miRNA:   3'- -UCUGGAGg------CGCUACAuC-GCAC-GCAGG- -5'
15673 5' -55.8 NC_004065.1 + 141055 0.71 0.788296
Target:  5'- aAGACCccuUCC-CGAUG-AGCGUcGCGUCUc -3'
miRNA:   3'- -UCUGG---AGGcGCUACaUCGCA-CGCAGG- -5'
15673 5' -55.8 NC_004065.1 + 144699 0.81 0.284503
Target:  5'- -cGCCUUCGCGAUcGUGGCGUGCGUg- -3'
miRNA:   3'- ucUGGAGGCGCUA-CAUCGCACGCAgg -5'
15673 5' -55.8 NC_004065.1 + 147997 0.67 0.933484
Target:  5'- cGGugUuggCCGUGGUcucccugagggcccGUAGCGcgGCGUCCa -3'
miRNA:   3'- -UCugGa--GGCGCUA--------------CAUCGCa-CGCAGG- -5'
15673 5' -55.8 NC_004065.1 + 148473 0.66 0.959691
Target:  5'- cAGAUCUCgGgGAcGUGGCGcGUGaUCCu -3'
miRNA:   3'- -UCUGGAGgCgCUaCAUCGCaCGC-AGG- -5'
15673 5' -55.8 NC_004065.1 + 158804 0.69 0.876008
Target:  5'- -uGCCU-CGCGAUG-AGCGUGCGa-- -3'
miRNA:   3'- ucUGGAgGCGCUACaUCGCACGCagg -5'
15673 5' -55.8 NC_004065.1 + 162688 0.73 0.684847
Target:  5'- gGGGCCUCgGCucGAgaUAGCGcgGCGUCCg -3'
miRNA:   3'- -UCUGGAGgCG--CUacAUCGCa-CGCAGG- -5'
15673 5' -55.8 NC_004065.1 + 168207 0.67 0.952303
Target:  5'- -cGCCUCCGaaucCGAUGaAGCGc-CGUCCg -3'
miRNA:   3'- ucUGGAGGC----GCUACaUCGCacGCAGG- -5'
15673 5' -55.8 NC_004065.1 + 171910 0.67 0.944056
Target:  5'- gGGGCCaaCGUGAauUGUAGCGUGaCG-CUa -3'
miRNA:   3'- -UCUGGagGCGCU--ACAUCGCAC-GCaGG- -5'
15673 5' -55.8 NC_004065.1 + 172226 0.67 0.944056
Target:  5'- cGACgaUCUGC-AUGUGGaCGUGCGUgCg -3'
miRNA:   3'- uCUGg-AGGCGcUACAUC-GCACGCAgG- -5'
15673 5' -55.8 NC_004065.1 + 185432 0.67 0.944056
Target:  5'- -cACCUCaGUGAggaacgguguuUGUggaAGCGUGUGUCCu -3'
miRNA:   3'- ucUGGAGgCGCU-----------ACA---UCGCACGCAGG- -5'
15673 5' -55.8 NC_004065.1 + 188252 0.79 0.394257
Target:  5'- cGGACCUCCGCGAgccaUGUuGCGcGCGgCCg -3'
miRNA:   3'- -UCUGGAGGCGCU----ACAuCGCaCGCaGG- -5'
15673 5' -55.8 NC_004065.1 + 199292 0.66 0.954985
Target:  5'- -aGCCUCUGaag-GUGGCGUccacgucguucaacGCGUCCg -3'
miRNA:   3'- ucUGGAGGCgcuaCAUCGCA--------------CGCAGG- -5'
15673 5' -55.8 NC_004065.1 + 221994 0.68 0.914
Target:  5'- cGGACUgaucggggCCGCGGUGuUAGCGgucGUGUaCCu -3'
miRNA:   3'- -UCUGGa-------GGCGCUAC-AUCGCa--CGCA-GG- -5'
15673 5' -55.8 NC_004065.1 + 222721 0.68 0.924912
Target:  5'- cGACCUCCcCGucugcGUAuCGUGCGUCg -3'
miRNA:   3'- uCUGGAGGcGCua---CAUcGCACGCAGg -5'
15673 5' -55.8 NC_004065.1 + 225159 0.69 0.868939
Target:  5'- cGGGCCUCCGCucaccgacGAcaccGUGGaCGUguacGCGUCCg -3'
miRNA:   3'- -UCUGGAGGCG--------CUa---CAUC-GCA----CGCAGG- -5'
15673 5' -55.8 NC_004065.1 + 226642 0.68 0.924912
Target:  5'- cGACCUCCGCGcucuccgaGUGgcucgaGGCGagGUGUCa -3'
miRNA:   3'- uCUGGAGGCGC--------UACa-----UCGCa-CGCAGg -5'
15673 5' -55.8 NC_004065.1 + 229656 0.67 0.948288
Target:  5'- cAGGCUcgucaggCgGCgGAUGUGGgugaGUGCGUCCg -3'
miRNA:   3'- -UCUGGa------GgCG-CUACAUCg---CACGCAGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.