miRNA display CGI


Results 21 - 40 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15673 5' -55.8 NC_004065.1 + 132571 0.71 0.77035
Target:  5'- aAGGCCUCCuucuUGAUGaAGUGUGCcucGUCCa -3'
miRNA:   3'- -UCUGGAGGc---GCUACaUCGCACG---CAGG- -5'
15673 5' -55.8 NC_004065.1 + 131219 0.67 0.941411
Target:  5'- cAGACCUCCGaggcgaacauguugcCGAUG-GGgGUGcCGUCg -3'
miRNA:   3'- -UCUGGAGGC---------------GCUACaUCgCAC-GCAGg -5'
15673 5' -55.8 NC_004065.1 + 128874 0.69 0.868222
Target:  5'- uGACCUCCGCcaacGAccgugggggcggcUGgcGCGUGCGgaugcgCCu -3'
miRNA:   3'- uCUGGAGGCG----CU-------------ACauCGCACGCa-----GG- -5'
15673 5' -55.8 NC_004065.1 + 128526 0.66 0.970368
Target:  5'- -uGCCUCCGCgGcgucgacggagagugGUGUGGC-UGUGUCUg -3'
miRNA:   3'- ucUGGAGGCG-C---------------UACAUCGcACGCAGG- -5'
15673 5' -55.8 NC_004065.1 + 124891 0.67 0.939604
Target:  5'- -uGCgCUCCuCGAUGU-GCGccGCGUCCa -3'
miRNA:   3'- ucUG-GAGGcGCUACAuCGCa-CGCAGG- -5'
15673 5' -55.8 NC_004065.1 + 119988 0.69 0.882872
Target:  5'- cGAcCCUCCGUccUGU-GCGUGUGUCg -3'
miRNA:   3'- uCU-GGAGGCGcuACAuCGCACGCAGg -5'
15673 5' -55.8 NC_004065.1 + 116347 0.66 0.963072
Target:  5'- uGGCCauggCCGUGAUGcAGaUGUugaGCGUCCu -3'
miRNA:   3'- uCUGGa---GGCGCUACaUC-GCA---CGCAGG- -5'
15673 5' -55.8 NC_004065.1 + 114273 0.71 0.779385
Target:  5'- gAGGCgCUCCGCGAUGUAacCGU-CGUCg -3'
miRNA:   3'- -UCUG-GAGGCGCUACAUc-GCAcGCAGg -5'
15673 5' -55.8 NC_004065.1 + 110179 0.66 0.963072
Target:  5'- cGACCUCUGCGgcGgccGCGacGCG-CCg -3'
miRNA:   3'- uCUGGAGGCGCuaCau-CGCa-CGCaGG- -5'
15673 5' -55.8 NC_004065.1 + 108918 0.67 0.952303
Target:  5'- -cGCCUCCGCGAcgaaAGCGcgcUGCG-CCu -3'
miRNA:   3'- ucUGGAGGCGCUaca-UCGC---ACGCaGG- -5'
15673 5' -55.8 NC_004065.1 + 107598 0.67 0.930033
Target:  5'- cGGCCgacuaCGCGGacacgAGCGUGUGUCUg -3'
miRNA:   3'- uCUGGag---GCGCUaca--UCGCACGCAGG- -5'
15673 5' -55.8 NC_004065.1 + 106894 0.67 0.942744
Target:  5'- -cGCgUCCGUGGugaacaguaacuucUGUAGCaggGCGUCCg -3'
miRNA:   3'- ucUGgAGGCGCU--------------ACAUCGca-CGCAGG- -5'
15673 5' -55.8 NC_004065.1 + 102441 0.66 0.959691
Target:  5'- --cCCUCUGCGAccUGaacGGCGUGcCGUCg -3'
miRNA:   3'- ucuGGAGGCGCU--ACa--UCGCAC-GCAGg -5'
15673 5' -55.8 NC_004065.1 + 101502 0.67 0.948288
Target:  5'- aGGugUUCguacaacuCGCGA-GUAGCGUcgGCGUCUa -3'
miRNA:   3'- -UCugGAG--------GCGCUaCAUCGCA--CGCAGG- -5'
15673 5' -55.8 NC_004065.1 + 99697 0.67 0.93493
Target:  5'- cGGGCgaggCgCGCGAUGUcgaGGCG-GCGUCUg -3'
miRNA:   3'- -UCUGga--G-GCGCUACA---UCGCaCGCAGG- -5'
15673 5' -55.8 NC_004065.1 + 99187 0.67 0.930033
Target:  5'- -cACCUCCucGCGGUaGUGguuacGCGUGUGUCUc -3'
miRNA:   3'- ucUGGAGG--CGCUA-CAU-----CGCACGCAGG- -5'
15673 5' -55.8 NC_004065.1 + 98800 0.66 0.96625
Target:  5'- aGGACgaugCCGCGAcg-GGCG-GCGUCUc -3'
miRNA:   3'- -UCUGga--GGCGCUacaUCGCaCGCAGG- -5'
15673 5' -55.8 NC_004065.1 + 97264 0.67 0.948288
Target:  5'- cGACCUUCGCGccgGUAG-GUGcCGUUg -3'
miRNA:   3'- uCUGGAGGCGCua-CAUCgCAC-GCAGg -5'
15673 5' -55.8 NC_004065.1 + 96564 0.66 0.96625
Target:  5'- uGGACC-CCGaGAcggagucgUGUGGaCG-GCGUCCg -3'
miRNA:   3'- -UCUGGaGGCgCU--------ACAUC-GCaCGCAGG- -5'
15673 5' -55.8 NC_004065.1 + 78130 0.76 0.509
Target:  5'- aGGAUCUCCGCcAUGgucAGC-UGCGUCCg -3'
miRNA:   3'- -UCUGGAGGCGcUACa--UCGcACGCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.