Results 41 - 60 of 60 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15673 | 5' | -55.8 | NC_004065.1 | + | 73683 | 0.68 | 0.924912 |
Target: 5'- -aACCUCUGUG-UGUGGUGUGgGUUUu -3' miRNA: 3'- ucUGGAGGCGCuACAUCGCACgCAGG- -5' |
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15673 | 5' | -55.8 | NC_004065.1 | + | 71664 | 0.66 | 0.967465 |
Target: 5'- aGGGCCUCCucagcagcagcagcgGCGgcGgcaacgggAGCGgcGCGUCCu -3' miRNA: 3'- -UCUGGAGG---------------CGCuaCa-------UCGCa-CGCAGG- -5' |
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15673 | 5' | -55.8 | NC_004065.1 | + | 70533 | 0.66 | 0.962079 |
Target: 5'- aAGGCCgCCGCGggGUugcGCcaguucuuucgcauGUGCGUCa -3' miRNA: 3'- -UCUGGaGGCGCuaCAu--CG--------------CACGCAGg -5' |
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15673 | 5' | -55.8 | NC_004065.1 | + | 67462 | 0.68 | 0.914 |
Target: 5'- cGGCCgaggCgGCGGUGUAcGUGUGCGa-- -3' miRNA: 3'- uCUGGa---GgCGCUACAU-CGCACGCagg -5' |
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15673 | 5' | -55.8 | NC_004065.1 | + | 65995 | 0.71 | 0.788296 |
Target: 5'- aGGugCUCagcggcagcaGCGAguUGUacgAGUGUGCGUCCu -3' miRNA: 3'- -UCugGAGg---------CGCU--ACA---UCGCACGCAGG- -5' |
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15673 | 5' | -55.8 | NC_004065.1 | + | 61704 | 0.67 | 0.939604 |
Target: 5'- -cACgUCCGCGgcGUAGCG-GCGgaugcgagCCa -3' miRNA: 3'- ucUGgAGGCGCuaCAUCGCaCGCa-------GG- -5' |
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15673 | 5' | -55.8 | NC_004065.1 | + | 61457 | 0.73 | 0.684847 |
Target: 5'- cGACCcgcUCCGUGAUGcgcuGCGccaugGCGUCCa -3' miRNA: 3'- uCUGG---AGGCGCUACau--CGCa----CGCAGG- -5' |
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15673 | 5' | -55.8 | NC_004065.1 | + | 56877 | 0.75 | 0.595976 |
Target: 5'- cGGGCCUCCGCcugGUauccAGCGUGCGgaugaUCCu -3' miRNA: 3'- -UCUGGAGGCGcuaCA----UCGCACGC-----AGG- -5' |
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15673 | 5' | -55.8 | NC_004065.1 | + | 52554 | 0.67 | 0.930033 |
Target: 5'- gGGACa---GCGAUGgagAGUGUGCG-CCg -3' miRNA: 3'- -UCUGgaggCGCUACa--UCGCACGCaGG- -5' |
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15673 | 5' | -55.8 | NC_004065.1 | + | 45991 | 0.66 | 0.959691 |
Target: 5'- cGACCUggGCGccGUGGCG-GCGUUg -3' miRNA: 3'- uCUGGAggCGCuaCAUCGCaCGCAGg -5' |
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15673 | 5' | -55.8 | NC_004065.1 | + | 45783 | 0.67 | 0.952303 |
Target: 5'- -cGCCgCCGCGGcgccggGUGGCGUagacCGUCCg -3' miRNA: 3'- ucUGGaGGCGCUa-----CAUCGCAc---GCAGG- -5' |
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15673 | 5' | -55.8 | NC_004065.1 | + | 45139 | 0.68 | 0.919568 |
Target: 5'- -uGCCUCCGCGAac-GGag-GCGUCCu -3' miRNA: 3'- ucUGGAGGCGCUacaUCgcaCGCAGG- -5' |
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15673 | 5' | -55.8 | NC_004065.1 | + | 43758 | 0.67 | 0.930033 |
Target: 5'- cGGAUCUCCGUcucuccaaguGAUGUaucGGCG-GCG-CCg -3' miRNA: 3'- -UCUGGAGGCG----------CUACA---UCGCaCGCaGG- -5' |
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15673 | 5' | -55.8 | NC_004065.1 | + | 30156 | 0.69 | 0.868939 |
Target: 5'- cGGACCcagCCGCGGgaUGUAGCG-GCuGUUa -3' miRNA: 3'- -UCUGGa--GGCGCU--ACAUCGCaCG-CAGg -5' |
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15673 | 5' | -55.8 | NC_004065.1 | + | 27767 | 0.66 | 0.96625 |
Target: 5'- gAGGCacgCCGCGAUGaaucugGCGUCCu -3' miRNA: 3'- -UCUGga-GGCGCUACaucgcaCGCAGG- -5' |
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15673 | 5' | -55.8 | NC_004065.1 | + | 23973 | 0.67 | 0.948288 |
Target: 5'- cGGACCggacggaCCGCGAcugcuUGUcgGGCGgGUGUCUg -3' miRNA: 3'- -UCUGGa------GGCGCU-----ACA--UCGCaCGCAGG- -5' |
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15673 | 5' | -55.8 | NC_004065.1 | + | 21661 | 0.66 | 0.969517 |
Target: 5'- aAGACCugUCCGCGGgucuugaaacggcagGUAGCGacgcagucGCcGUCCg -3' miRNA: 3'- -UCUGG--AGGCGCUa--------------CAUCGCa-------CG-CAGG- -5' |
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15673 | 5' | -55.8 | NC_004065.1 | + | 19592 | 1.12 | 0.003442 |
Target: 5'- gAGACCUCCGCGAUGUAGCGUGCGUCCu -3' miRNA: 3'- -UCUGGAGGCGCUACAUCGCACGCAGG- -5' |
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15673 | 5' | -55.8 | NC_004065.1 | + | 18132 | 0.67 | 0.951911 |
Target: 5'- cGGGCCcgCCGCGGgacgggaUGuUGGCGguauCGUCCg -3' miRNA: 3'- -UCUGGa-GGCGCU-------AC-AUCGCac--GCAGG- -5' |
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15673 | 5' | -55.8 | NC_004065.1 | + | 544 | 0.68 | 0.919568 |
Target: 5'- -aGCUUCCGCGAcg-AGCG-GCGcCCg -3' miRNA: 3'- ucUGGAGGCGCUacaUCGCaCGCaGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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