Results 21 - 40 of 60 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15673 | 5' | -55.8 | NC_004065.1 | + | 172226 | 0.67 | 0.944056 |
Target: 5'- cGACgaUCUGC-AUGUGGaCGUGCGUgCg -3' miRNA: 3'- uCUGg-AGGCGcUACAUC-GCACGCAgG- -5' |
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15673 | 5' | -55.8 | NC_004065.1 | + | 147997 | 0.67 | 0.933484 |
Target: 5'- cGGugUuggCCGUGGUcucccugagggcccGUAGCGcgGCGUCCa -3' miRNA: 3'- -UCugGa--GGCGCUA--------------CAUCGCa-CGCAGG- -5' |
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15673 | 5' | -55.8 | NC_004065.1 | + | 52554 | 0.67 | 0.930033 |
Target: 5'- gGGACa---GCGAUGgagAGUGUGCG-CCg -3' miRNA: 3'- -UCUGgaggCGCUACa--UCGCACGCaGG- -5' |
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15673 | 5' | -55.8 | NC_004065.1 | + | 27767 | 0.66 | 0.96625 |
Target: 5'- gAGGCacgCCGCGAUGaaucugGCGUCCu -3' miRNA: 3'- -UCUGga-GGCGCUACaucgcaCGCAGG- -5' |
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15673 | 5' | -55.8 | NC_004065.1 | + | 185432 | 0.67 | 0.944056 |
Target: 5'- -cACCUCaGUGAggaacgguguuUGUggaAGCGUGUGUCCu -3' miRNA: 3'- ucUGGAGgCGCU-----------ACA---UCGCACGCAGG- -5' |
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15673 | 5' | -55.8 | NC_004065.1 | + | 73683 | 0.68 | 0.924912 |
Target: 5'- -aACCUCUGUG-UGUGGUGUGgGUUUu -3' miRNA: 3'- ucUGGAGGCGCuACAUCGCACgCAGG- -5' |
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15673 | 5' | -55.8 | NC_004065.1 | + | 96564 | 0.66 | 0.96625 |
Target: 5'- uGGACC-CCGaGAcggagucgUGUGGaCG-GCGUCCg -3' miRNA: 3'- -UCUGGaGGCgCU--------ACAUC-GCaCGCAGG- -5' |
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15673 | 5' | -55.8 | NC_004065.1 | + | 222721 | 0.68 | 0.924912 |
Target: 5'- cGACCUCCcCGucugcGUAuCGUGCGUCg -3' miRNA: 3'- uCUGGAGGcGCua---CAUcGCACGCAGg -5' |
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15673 | 5' | -55.8 | NC_004065.1 | + | 23973 | 0.67 | 0.948288 |
Target: 5'- cGGACCggacggaCCGCGAcugcuUGUcgGGCGgGUGUCUg -3' miRNA: 3'- -UCUGGa------GGCGCU-----ACA--UCGCaCGCAGG- -5' |
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15673 | 5' | -55.8 | NC_004065.1 | + | 98800 | 0.66 | 0.96625 |
Target: 5'- aGGACgaugCCGCGAcg-GGCG-GCGUCUc -3' miRNA: 3'- -UCUGga--GGCGCUacaUCGCaCGCAGG- -5' |
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15673 | 5' | -55.8 | NC_004065.1 | + | 226642 | 0.68 | 0.924912 |
Target: 5'- cGACCUCCGCGcucuccgaGUGgcucgaGGCGagGUGUCa -3' miRNA: 3'- uCUGGAGGCGC--------UACa-----UCGCa-CGCAGg -5' |
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15673 | 5' | -55.8 | NC_004065.1 | + | 99697 | 0.67 | 0.93493 |
Target: 5'- cGGGCgaggCgCGCGAUGUcgaGGCG-GCGUCUg -3' miRNA: 3'- -UCUGga--G-GCGCUACA---UCGCaCGCAGG- -5' |
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15673 | 5' | -55.8 | NC_004065.1 | + | 107598 | 0.67 | 0.930033 |
Target: 5'- cGGCCgacuaCGCGGacacgAGCGUGUGUCUg -3' miRNA: 3'- uCUGGag---GCGCUaca--UCGCACGCAGG- -5' |
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15673 | 5' | -55.8 | NC_004065.1 | + | 43758 | 0.67 | 0.930033 |
Target: 5'- cGGAUCUCCGUcucuccaaguGAUGUaucGGCG-GCG-CCg -3' miRNA: 3'- -UCUGGAGGCG----------CUACA---UCGCaCGCaGG- -5' |
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15673 | 5' | -55.8 | NC_004065.1 | + | 71664 | 0.66 | 0.967465 |
Target: 5'- aGGGCCUCCucagcagcagcagcgGCGgcGgcaacgggAGCGgcGCGUCCu -3' miRNA: 3'- -UCUGGAGG---------------CGCuaCa-------UCGCa-CGCAGG- -5' |
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15673 | 5' | -55.8 | NC_004065.1 | + | 21661 | 0.66 | 0.969517 |
Target: 5'- aAGACCugUCCGCGGgucuugaaacggcagGUAGCGacgcagucGCcGUCCg -3' miRNA: 3'- -UCUGG--AGGCGCUa--------------CAUCGCa-------CG-CAGG- -5' |
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15673 | 5' | -55.8 | NC_004065.1 | + | 544 | 0.68 | 0.919568 |
Target: 5'- -aGCUUCCGCGAcg-AGCG-GCGcCCg -3' miRNA: 3'- ucUGGAGGCGCUacaUCGCaCGCaGG- -5' |
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15673 | 5' | -55.8 | NC_004065.1 | + | 128526 | 0.66 | 0.970368 |
Target: 5'- -uGCCUCCGCgGcgucgacggagagugGUGUGGC-UGUGUCUg -3' miRNA: 3'- ucUGGAGGCG-C---------------UACAUCGcACGCAGG- -5' |
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15673 | 5' | -55.8 | NC_004065.1 | + | 18132 | 0.67 | 0.951911 |
Target: 5'- cGGGCCcgCCGCGGgacgggaUGuUGGCGguauCGUCCg -3' miRNA: 3'- -UCUGGa-GGCGCU-------AC-AUCGCac--GCAGG- -5' |
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15673 | 5' | -55.8 | NC_004065.1 | + | 101502 | 0.67 | 0.948288 |
Target: 5'- aGGugUUCguacaacuCGCGA-GUAGCGUcgGCGUCUa -3' miRNA: 3'- -UCugGAG--------GCGCUaCAUCGCA--CGCAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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