miRNA display CGI


Results 41 - 60 of 244 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15674 3' -52.3 NC_004065.1 + 188735 0.67 0.97549
Target:  5'- aAUAGCAggcgcACGGCGGCGaagcccaccAGGGCGaucGCGACc -3'
miRNA:   3'- -UGUCGU-----UGUCGUCGU---------UCUCGU---CGUUG- -5'
15674 3' -52.3 NC_004065.1 + 164223 0.67 0.976515
Target:  5'- aGCcGCAugACGGCGGUgaagucgggaucugaGGGAGCGgGCAACa -3'
miRNA:   3'- -UGuCGU--UGUCGUCG---------------UUCUCGU-CGUUG- -5'
15674 3' -52.3 NC_004065.1 + 89311 0.67 0.977994
Target:  5'- -gAGC-GCGGCAGCGAGuucuGCAG-GACg -3'
miRNA:   3'- ugUCGuUGUCGUCGUUCu---CGUCgUUG- -5'
15674 3' -52.3 NC_004065.1 + 166138 0.67 0.977994
Target:  5'- gGCAGaGACGuCGGCGccGGCGGCAGCg -3'
miRNA:   3'- -UGUCgUUGUcGUCGUucUCGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 90361 0.67 0.981177
Target:  5'- gACAGCAGCGGCcgccGCAcgcgccgcacagcuuGGAGcCGGCGu- -3'
miRNA:   3'- -UGUCGUUGUCGu---CGU---------------UCUC-GUCGUug -5'
15674 3' -52.3 NC_004065.1 + 163479 0.67 0.980305
Target:  5'- -gAGCuccguCGGCGGCGccGGuGGCGGCGGCu -3'
miRNA:   3'- ugUCGuu---GUCGUCGU--UC-UCGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 1000 0.67 0.972783
Target:  5'- gGCAGCcgcugucgggaGACgAGCgugccccgcaGGCAGGcGCAGCGACg -3'
miRNA:   3'- -UGUCG-----------UUG-UCG----------UCGUUCuCGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 110735 0.67 0.97549
Target:  5'- gGCGGCcgucugcuGCAGCAGCAu--GUAGuCGACg -3'
miRNA:   3'- -UGUCGu-------UGUCGUCGUucuCGUC-GUUG- -5'
15674 3' -52.3 NC_004065.1 + 77504 0.67 0.980305
Target:  5'- cCGGCGcCGGCGGagcccgAGGAGCuGCGGCu -3'
miRNA:   3'- uGUCGUuGUCGUCg-----UUCUCGuCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 71251 0.67 0.972783
Target:  5'- cCAGCAuCAGCuGCAGGuucGaCAGCGAUu -3'
miRNA:   3'- uGUCGUuGUCGuCGUUCu--C-GUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 185678 0.67 0.969866
Target:  5'- -aGGUAucuCAGUAGCGaguccGGAGCAGgGGCg -3'
miRNA:   3'- ugUCGUu--GUCGUCGU-----UCUCGUCgUUG- -5'
15674 3' -52.3 NC_004065.1 + 230198 0.67 0.97549
Target:  5'- cGCGGCGcccuCGGCGGCAaaaaAGuGCAGCc-- -3'
miRNA:   3'- -UGUCGUu---GUCGUCGU----UCuCGUCGuug -5'
15674 3' -52.3 NC_004065.1 + 110101 0.67 0.97389
Target:  5'- cCGGCAccuGCGcgauggccccccgccGCAGCAGGA-CGGCGACg -3'
miRNA:   3'- uGUCGU---UGU---------------CGUCGUUCUcGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 213367 0.67 0.969866
Target:  5'- -uGGUAACAG-GGCuuGGAGUAGUAACa -3'
miRNA:   3'- ugUCGUUGUCgUCGu-UCUCGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 89390 0.67 0.969866
Target:  5'- gGCAGCGGaagAGCAGgaAGGAGaGGCAGCc -3'
miRNA:   3'- -UGUCGUUg--UCGUCg-UUCUCgUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 96763 0.67 0.969866
Target:  5'- -gGGCGACGGCGGa---GGCGGCAucGCg -3'
miRNA:   3'- ugUCGUUGUCGUCguucUCGUCGU--UG- -5'
15674 3' -52.3 NC_004065.1 + 139406 0.67 0.969866
Target:  5'- gACGGCccGCGcGCAGCGAGAGUGcGCuGCu -3'
miRNA:   3'- -UGUCGu-UGU-CGUCGUUCUCGU-CGuUG- -5'
15674 3' -52.3 NC_004065.1 + 200539 0.67 0.969866
Target:  5'- -gGGCGuccAUGGCgagGGCGAcGGGCGGCAGCg -3'
miRNA:   3'- ugUCGU---UGUCG---UCGUU-CUCGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 19575 0.67 0.972783
Target:  5'- -uGGCGGCGGUAGCGucGGCuGCGAa -3'
miRNA:   3'- ugUCGUUGUCGUCGUucUCGuCGUUg -5'
15674 3' -52.3 NC_004065.1 + 100758 0.67 0.972783
Target:  5'- gUAGCcGCGGUAGCuguGGGGCGGgcuCAGCu -3'
miRNA:   3'- uGUCGuUGUCGUCGu--UCUCGUC---GUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.