miRNA display CGI


Results 61 - 80 of 244 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15674 3' -52.3 NC_004065.1 + 115059 0.67 0.97549
Target:  5'- -gGGCAACGGCGcgcGCGAGGacGCGGCcuCg -3'
miRNA:   3'- ugUCGUUGUCGU---CGUUCU--CGUCGuuG- -5'
15674 3' -52.3 NC_004065.1 + 90361 0.67 0.981177
Target:  5'- gACAGCAGCGGCcgccGCAcgcgccgcacagcuuGGAGcCGGCGu- -3'
miRNA:   3'- -UGUCGUUGUCGu---CGU---------------UCUC-GUCGUug -5'
15674 3' -52.3 NC_004065.1 + 139599 0.67 0.972783
Target:  5'- cGCGGCGAUcGCcguuGGCAaggcgcagaugcGGAGCGGUGGCg -3'
miRNA:   3'- -UGUCGUUGuCG----UCGU------------UCUCGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 200453 0.67 0.972783
Target:  5'- cGCGGCcgccguCAGaUAGCGGGAGC-GCGGCc -3'
miRNA:   3'- -UGUCGuu----GUC-GUCGUUCUCGuCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 127646 0.68 0.959791
Target:  5'- uGCcGCuGCGGCGcCGAGGGCGGCGGg -3'
miRNA:   3'- -UGuCGuUGUCGUcGUUCUCGUCGUUg -5'
15674 3' -52.3 NC_004065.1 + 166733 0.68 0.959791
Target:  5'- -gAGCucgAugGGCAGCGGGAGCucgccGUAGCu -3'
miRNA:   3'- ugUCG---UugUCGUCGUUCUCGu----CGUUG- -5'
15674 3' -52.3 NC_004065.1 + 18730 0.68 0.95597
Target:  5'- cACAGagucCAGCAGCAGUGAcAGUAGCGGg -3'
miRNA:   3'- -UGUC----GUUGUCGUCGUUcUCGUCGUUg -5'
15674 3' -52.3 NC_004065.1 + 189446 0.68 0.95191
Target:  5'- aACGGCAGCGGCAuGUuguuGGGUcucGGCAAUa -3'
miRNA:   3'- -UGUCGUUGUCGU-CGuu--CUCG---UCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 126661 0.68 0.95191
Target:  5'- gACGGCGucggcguuCAGCAGCuuGucCAGCAGCg -3'
miRNA:   3'- -UGUCGUu-------GUCGUCGuuCucGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 86274 0.68 0.95191
Target:  5'- aACGGUAgaucuGCuGCccgAGCuGGGGCAGCAGCu -3'
miRNA:   3'- -UGUCGU-----UGuCG---UCGuUCUCGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 200859 0.68 0.959791
Target:  5'- gGCGuCGACGGgGGCGcGGGCGGUGGCg -3'
miRNA:   3'- -UGUcGUUGUCgUCGUuCUCGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 72818 0.68 0.966733
Target:  5'- cCAGCAccGCuucuuGCuGCGAGAacucguccaGCAGCGACa -3'
miRNA:   3'- uGUCGU--UGu----CGuCGUUCU---------CGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 19418 0.68 0.966733
Target:  5'- uCGGCAgaaAGCGGCAucGGCAGCAu- -3'
miRNA:   3'- uGUCGUug-UCGUCGUucUCGUCGUug -5'
15674 3' -52.3 NC_004065.1 + 26365 0.68 0.963377
Target:  5'- -uGGCGACGGCGGCGGGGauacGgGGCGu- -3'
miRNA:   3'- ugUCGUUGUCGUCGUUCU----CgUCGUug -5'
15674 3' -52.3 NC_004065.1 + 120904 0.68 0.963377
Target:  5'- cGCGGCGACAGCAcccGCAGuccguacuuGuGCGGCGuGCa -3'
miRNA:   3'- -UGUCGUUGUCGU---CGUU---------CuCGUCGU-UG- -5'
15674 3' -52.3 NC_004065.1 + 135156 0.68 0.959791
Target:  5'- uGCAGCAcCAcGCugaaGGCGAGuccGUAGCGACa -3'
miRNA:   3'- -UGUCGUuGU-CG----UCGUUCu--CGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 70445 0.68 0.966733
Target:  5'- cCGGCAGCAGCAccuucugcuGCcAGccCAGCAACg -3'
miRNA:   3'- uGUCGUUGUCGU---------CGuUCucGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 13178 0.68 0.966733
Target:  5'- cGCGGCgAACAGCAGacccAGCAGgAGCc -3'
miRNA:   3'- -UGUCG-UUGUCGUCguucUCGUCgUUG- -5'
15674 3' -52.3 NC_004065.1 + 115815 0.68 0.959791
Target:  5'- uGCAGCGuCAGgAGCugucucuGAGCGGCcGCc -3'
miRNA:   3'- -UGUCGUuGUCgUCGuu-----CUCGUCGuUG- -5'
15674 3' -52.3 NC_004065.1 + 54707 0.68 0.95191
Target:  5'- cGCGGCAgaccgcgcgcgaACAGCgAGCGAGAGgcugaGGCGAa -3'
miRNA:   3'- -UGUCGU------------UGUCG-UCGUUCUCg----UCGUUg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.