Results 101 - 120 of 244 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
15674 | 3' | -52.3 | NC_004065.1 | + | 78663 | 0.69 | 0.947606 |
Target: 5'- cCAGC-GCAGCGGCcGGcGCcGCGGCg -3' miRNA: 3'- uGUCGuUGUCGUCGuUCuCGuCGUUG- -5' |
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15674 | 3' | -52.3 | NC_004065.1 | + | 208737 | 0.69 | 0.943055 |
Target: 5'- cGCGGgAACGGCgAGCAgauAGAGCAaGgAACa -3' miRNA: 3'- -UGUCgUUGUCG-UCGU---UCUCGU-CgUUG- -5' |
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15674 | 3' | -52.3 | NC_004065.1 | + | 134028 | 0.69 | 0.943055 |
Target: 5'- aAguGCGAUGGCGGCGGaGGCuGCGAUa -3' miRNA: 3'- -UguCGUUGUCGUCGUUcUCGuCGUUG- -5' |
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15674 | 3' | -52.3 | NC_004065.1 | + | 72509 | 0.69 | 0.943055 |
Target: 5'- aGguGgAACGGCAGguGGuGCuGCGACa -3' miRNA: 3'- -UguCgUUGUCGUCguUCuCGuCGUUG- -5' |
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15674 | 3' | -52.3 | NC_004065.1 | + | 216880 | 0.69 | 0.938254 |
Target: 5'- gACGGUcguucGCGGCGGCGcGAGguGCGAg -3' miRNA: 3'- -UGUCGu----UGUCGUCGUuCUCguCGUUg -5' |
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15674 | 3' | -52.3 | NC_004065.1 | + | 154017 | 0.69 | 0.938254 |
Target: 5'- cGCGGCGGCGGCGGCGacguugucaucgAGAGgUAGUGGa -3' miRNA: 3'- -UGUCGUUGUCGUCGU------------UCUC-GUCGUUg -5' |
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15674 | 3' | -52.3 | NC_004065.1 | + | 99724 | 0.69 | 0.927351 |
Target: 5'- gACAGCGACGGCAacuuucugcaaucGCGGGcgaGGCGcGCGAUg -3' miRNA: 3'- -UGUCGUUGUCGU-------------CGUUC---UCGU-CGUUG- -5' |
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15674 | 3' | -52.3 | NC_004065.1 | + | 114700 | 0.69 | 0.938254 |
Target: 5'- uCAGCAGCAGCcccucuacaGGgGAGAGaggaauaGGCGGCg -3' miRNA: 3'- uGUCGUUGUCG---------UCgUUCUCg------UCGUUG- -5' |
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15674 | 3' | -52.3 | NC_004065.1 | + | 56636 | 0.69 | 0.938254 |
Target: 5'- uGCGGUGGCAGCGGCc---GCGGCAc- -3' miRNA: 3'- -UGUCGUUGUCGUCGuucuCGUCGUug -5' |
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15674 | 3' | -52.3 | NC_004065.1 | + | 62581 | 0.69 | 0.927895 |
Target: 5'- gACAGCAGCAGcCAGUAGGuuAGC-GCcGCc -3' miRNA: 3'- -UGUCGUUGUC-GUCGUUC--UCGuCGuUG- -5' |
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15674 | 3' | -52.3 | NC_004065.1 | + | 119516 | 0.69 | 0.946267 |
Target: 5'- uCAGCAugGGCGGCGcggggacguggucgAGGGCcagGGCGAa -3' miRNA: 3'- uGUCGUugUCGUCGU--------------UCUCG---UCGUUg -5' |
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15674 | 3' | -52.3 | NC_004065.1 | + | 70504 | 0.69 | 0.927895 |
Target: 5'- -aGGCGAUGGCGGCGcccuucucgacGGAGCuGCAGg -3' miRNA: 3'- ugUCGUUGUCGUCGU-----------UCUCGuCGUUg -5' |
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15674 | 3' | -52.3 | NC_004065.1 | + | 120555 | 0.69 | 0.933201 |
Target: 5'- cCGGCGGCGGuCGGCGcGAGCgGGCGGg -3' miRNA: 3'- uGUCGUUGUC-GUCGUuCUCG-UCGUUg -5' |
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15674 | 3' | -52.3 | NC_004065.1 | + | 127220 | 0.69 | 0.93776 |
Target: 5'- -gAGCGGCGGCcGCGAGGaucgggcGCGGUGGCg -3' miRNA: 3'- ugUCGUUGUCGuCGUUCU-------CGUCGUUG- -5' |
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15674 | 3' | -52.3 | NC_004065.1 | + | 84248 | 0.7 | 0.910457 |
Target: 5'- aGCAGCAACagaAGCAGCAguGGuaccauuuucAGUAGCAGa -3' miRNA: 3'- -UGUCGUUG---UCGUCGU--UC----------UCGUCGUUg -5' |
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15674 | 3' | -52.3 | NC_004065.1 | + | 34620 | 0.7 | 0.890769 |
Target: 5'- cCGGCAGCcgAGCGGCGgAGGGUGGCGu- -3' miRNA: 3'- uGUCGUUG--UCGUCGU-UCUCGUCGUug -5' |
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15674 | 3' | -52.3 | NC_004065.1 | + | 86963 | 0.7 | 0.897578 |
Target: 5'- gGCAGgAGgGGaagagggGGCGGGGGCGGCGGCa -3' miRNA: 3'- -UGUCgUUgUCg------UCGUUCUCGUCGUUG- -5' |
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15674 | 3' | -52.3 | NC_004065.1 | + | 96817 | 0.7 | 0.910457 |
Target: 5'- cGCGGCucguCGGCGGaCGAGucCAGCGACu -3' miRNA: 3'- -UGUCGuu--GUCGUC-GUUCucGUCGUUG- -5' |
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15674 | 3' | -52.3 | NC_004065.1 | + | 65989 | 0.7 | 0.890769 |
Target: 5'- uCAGCGGCAGCAGCGAGuuGUA-CGAg -3' miRNA: 3'- uGUCGUUGUCGUCGUUCu-CGUcGUUg -5' |
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15674 | 3' | -52.3 | NC_004065.1 | + | 127781 | 0.7 | 0.904141 |
Target: 5'- cACGGCGACGG-GGCccauGAGCAGgCGGCa -3' miRNA: 3'- -UGUCGUUGUCgUCGuu--CUCGUC-GUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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