miRNA display CGI


Results 41 - 60 of 244 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15674 3' -52.3 NC_004065.1 + 99404 0.78 0.535618
Target:  5'- gACAGguGCGcucGCAGCAGGGGCccgAGCGGCa -3'
miRNA:   3'- -UGUCguUGU---CGUCGUUCUCG---UCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 62864 0.77 0.545857
Target:  5'- cGCGGCuGCuGCcgccGGCGGGGGCGGCGGCg -3'
miRNA:   3'- -UGUCGuUGuCG----UCGUUCUCGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 127887 0.77 0.545857
Target:  5'- cGCcGCAGCGGCAGCGcGAGCGGUGcACg -3'
miRNA:   3'- -UGuCGUUGUCGUCGUuCUCGUCGU-UG- -5'
15674 3' -52.3 NC_004065.1 + 159942 0.77 0.556158
Target:  5'- gGCGGCGACGGCGGCGAGgAGC-GCcuCg -3'
miRNA:   3'- -UGUCGUUGUCGUCGUUC-UCGuCGuuG- -5'
15674 3' -52.3 NC_004065.1 + 224268 0.77 0.556158
Target:  5'- -aAGCAACAGCuGC-GGAGCAGCGcuaGCg -3'
miRNA:   3'- ugUCGUUGUCGuCGuUCUCGUCGU---UG- -5'
15674 3' -52.3 NC_004065.1 + 62282 0.77 0.566515
Target:  5'- cCAGCAGCAGCAGCGauggcgaccGGGGgAGaCGACg -3'
miRNA:   3'- uGUCGUUGUCGUCGU---------UCUCgUC-GUUG- -5'
15674 3' -52.3 NC_004065.1 + 118734 0.77 0.566515
Target:  5'- cGCAGCAACAGCGGCAacuaucaccgAGAGC--CAACc -3'
miRNA:   3'- -UGUCGUUGUCGUCGU----------UCUCGucGUUG- -5'
15674 3' -52.3 NC_004065.1 + 36183 0.77 0.587367
Target:  5'- -aAGCGACGGCAGCAGGAauggugGCGGUuACa -3'
miRNA:   3'- ugUCGUUGUCGUCGUUCU------CGUCGuUG- -5'
15674 3' -52.3 NC_004065.1 + 166456 0.77 0.587367
Target:  5'- aGCAGCAcgagcACGGaCAGCAcGGGCGGUGACa -3'
miRNA:   3'- -UGUCGU-----UGUC-GUCGUuCUCGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 28619 0.76 0.5968
Target:  5'- gUAGCAGCGGCgcgcgaaAGCGAGGcuGCGGCGGCa -3'
miRNA:   3'- uGUCGUUGUCG-------UCGUUCU--CGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 20254 0.76 0.5968
Target:  5'- uCAGCAACAGCAGUcgcGGAcgcacacGCAGCAGCn -3'
miRNA:   3'- uGUCGUUGUCGUCGu--UCU-------CGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 176181 0.76 0.597849
Target:  5'- gAUGGCGACGGCGGCGGaGGCAGCu-- -3'
miRNA:   3'- -UGUCGUUGUCGUCGUUcUCGUCGuug -5'
15674 3' -52.3 NC_004065.1 + 128416 0.76 0.602049
Target:  5'- gGCAGCGGCGGCGGCGccgccaccgagucuGAGC-GCGGCg -3'
miRNA:   3'- -UGUCGUUGUCGUCGUu-------------CUCGuCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 87011 0.76 0.608357
Target:  5'- cGCGGCGgggGCGGCAGCuucAAGGGCcgaGGCGGCg -3'
miRNA:   3'- -UGUCGU---UGUCGUCG---UUCUCG---UCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 140184 0.76 0.608357
Target:  5'- aACAaCAACAGCGGCAGuAGCAGCAc- -3'
miRNA:   3'- -UGUcGUUGUCGUCGUUcUCGUCGUug -5'
15674 3' -52.3 NC_004065.1 + 26630 0.76 0.608357
Target:  5'- uGCGGCGACAGCG---GGAGCAGCGu- -3'
miRNA:   3'- -UGUCGUUGUCGUcguUCUCGUCGUug -5'
15674 3' -52.3 NC_004065.1 + 226605 0.76 0.629422
Target:  5'- uCAGCAACAGCAGaagAAGuGGUGGCAACc -3'
miRNA:   3'- uGUCGUUGUCGUCg--UUC-UCGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 122510 0.76 0.639962
Target:  5'- uCGGUGuCGGC-GCGGGAGCAGCGGCg -3'
miRNA:   3'- uGUCGUuGUCGuCGUUCUCGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 62476 0.75 0.661013
Target:  5'- gACGGCAGgAGCGGCcgcGGCGGUAGCg -3'
miRNA:   3'- -UGUCGUUgUCGUCGuucUCGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 152304 0.75 0.661013
Target:  5'- uGCGGCGGCGGCGGUGccGGCGGgGACg -3'
miRNA:   3'- -UGUCGUUGUCGUCGUucUCGUCgUUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.