miRNA display CGI


Results 61 - 80 of 244 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15674 3' -52.3 NC_004065.1 + 76654 0.75 0.661014
Target:  5'- gGCGGCGccacucggACGGCGGCGAGcucauccGCGGCGGCg -3'
miRNA:   3'- -UGUCGU--------UGUCGUCGUUCu------CGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 225900 0.75 0.675696
Target:  5'- gACGGCGGCGGCGGgAgccggagugcuguucGGAGCGGUGGCc -3'
miRNA:   3'- -UGUCGUUGUCGUCgU---------------UCUCGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 44845 0.75 0.681966
Target:  5'- gACAGCGACAcgGGCcGGAGCAGCGu- -3'
miRNA:   3'- -UGUCGUUGUcgUCGuUCUCGUCGUug -5'
15674 3' -52.3 NC_004065.1 + 97953 0.75 0.681966
Target:  5'- gACAGCccgGGCGGCGGC---GGCAGCGACc -3'
miRNA:   3'- -UGUCG---UUGUCGUCGuucUCGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 179134 0.75 0.681966
Target:  5'- uACAGgGGgAGCAGUAGGAGUgaagacAGCAGCa -3'
miRNA:   3'- -UGUCgUUgUCGUCGUUCUCG------UCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 97945 0.75 0.691342
Target:  5'- cCGGCGGCAGCGcgucgaagugcuuGCGgaAGAGCAGCAGa -3'
miRNA:   3'- uGUCGUUGUCGU-------------CGU--UCUCGUCGUUg -5'
15674 3' -52.3 NC_004065.1 + 29976 0.75 0.692382
Target:  5'- -uGGCGGCGGCGGCGGcGGCAGUggUa -3'
miRNA:   3'- ugUCGUUGUCGUCGUUcUCGUCGuuG- -5'
15674 3' -52.3 NC_004065.1 + 128571 0.75 0.692382
Target:  5'- --cGCAGCGGCAGCGAcgucGGCGGCGAa -3'
miRNA:   3'- uguCGUUGUCGUCGUUc---UCGUCGUUg -5'
15674 3' -52.3 NC_004065.1 + 24669 0.74 0.712017
Target:  5'- uCGGCAGCAGCGGCAAGAucuacaucuaccuGCuucucacgcGCAGCg -3'
miRNA:   3'- uGUCGUUGUCGUCGUUCU-------------CGu--------CGUUG- -5'
15674 3' -52.3 NC_004065.1 + 127134 0.74 0.72327
Target:  5'- cGCGGCGGCGGC-GCuaccGGCGGCGGCg -3'
miRNA:   3'- -UGUCGUUGUCGuCGuuc-UCGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 48104 0.74 0.72327
Target:  5'- -uGGCGGCGGCGGU---GGCGGCGGCg -3'
miRNA:   3'- ugUCGUUGUCGUCGuucUCGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 90420 0.74 0.733413
Target:  5'- gACGGCGGaGGCGGC-GGAGCcGGCGGCa -3'
miRNA:   3'- -UGUCGUUgUCGUCGuUCUCG-UCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 6432 0.74 0.733413
Target:  5'- cAUAGCAccgACAGCgAGCcAGAGUAGCGAg -3'
miRNA:   3'- -UGUCGU---UGUCG-UCGuUCUCGUCGUUg -5'
15674 3' -52.3 NC_004065.1 + 26420 0.74 0.733413
Target:  5'- cACGGCGGCGGCGGCcuccGAGAGCA-CAuACa -3'
miRNA:   3'- -UGUCGUUGUCGUCG----UUCUCGUcGU-UG- -5'
15674 3' -52.3 NC_004065.1 + 24719 0.74 0.733413
Target:  5'- --cGUGACAGCAGagAAGAGCGGCGAg -3'
miRNA:   3'- uguCGUUGUCGUCg-UUCUCGUCGUUg -5'
15674 3' -52.3 NC_004065.1 + 24861 0.73 0.75341
Target:  5'- gGCGGCGACGGCGGCcucGAcGGUGGCAAa -3'
miRNA:   3'- -UGUCGUUGUCGUCG---UUcUCGUCGUUg -5'
15674 3' -52.3 NC_004065.1 + 109242 0.73 0.763243
Target:  5'- gGCGGCggUAGCGGCGucgguGAcgaugacgacucGCGGCAGCa -3'
miRNA:   3'- -UGUCGuuGUCGUCGUu----CU------------CGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 88676 0.73 0.763244
Target:  5'- --cGCGACGGCGGCGGGcuccgcugccGGCGGUGGCg -3'
miRNA:   3'- uguCGUUGUCGUCGUUC----------UCGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 56512 0.73 0.771988
Target:  5'- uGCGGCGACGGaC-GCGAGAuuucuucagagugGCGGCGACa -3'
miRNA:   3'- -UGUCGUUGUC-GuCGUUCU-------------CGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 139036 0.73 0.772954
Target:  5'- cGCAG-AACAGCAGCcAGAGCA-CGGCc -3'
miRNA:   3'- -UGUCgUUGUCGUCGuUCUCGUcGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.