Results 81 - 100 of 244 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
15674 | 3' | -52.3 | NC_004065.1 | + | 100283 | 0.73 | 0.772954 |
Target: 5'- cGCGGgGGCGGCGGaCGAGgcgaugcuguacGGCGGCGGCg -3' miRNA: 3'- -UGUCgUUGUCGUC-GUUC------------UCGUCGUUG- -5' |
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15674 | 3' | -52.3 | NC_004065.1 | + | 68579 | 0.73 | 0.78253 |
Target: 5'- aGCAacGCGGCGGCGGCGauccAGAGCGcCGACa -3' miRNA: 3'- -UGU--CGUUGUCGUCGU----UCUCGUcGUUG- -5' |
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15674 | 3' | -52.3 | NC_004065.1 | + | 68591 | 0.73 | 0.78253 |
Target: 5'- gGCAGCugcuGCAGCAGCucccGCAGCcACg -3' miRNA: 3'- -UGUCGu---UGUCGUCGuucuCGUCGuUG- -5' |
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15674 | 3' | -52.3 | NC_004065.1 | + | 61518 | 0.73 | 0.791963 |
Target: 5'- cGCGGCGACAGCAucccGCAGGcgaucGCAGUcGCg -3' miRNA: 3'- -UGUCGUUGUCGU----CGUUCu----CGUCGuUG- -5' |
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15674 | 3' | -52.3 | NC_004065.1 | + | 38444 | 0.73 | 0.801244 |
Target: 5'- gACGGCGGCAGgaggcucauCGGCAcacuggugguGGGCAGCGACa -3' miRNA: 3'- -UGUCGUUGUC---------GUCGUu---------CUCGUCGUUG- -5' |
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15674 | 3' | -52.3 | NC_004065.1 | + | 148638 | 0.73 | 0.801244 |
Target: 5'- gACAGCGGCAGCgacucgauGGCGAacAGCAGCAuGCa -3' miRNA: 3'- -UGUCGUUGUCG--------UCGUUc-UCGUCGU-UG- -5' |
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15674 | 3' | -52.3 | NC_004065.1 | + | 45538 | 0.73 | 0.801244 |
Target: 5'- cCGGCGccGCGGCGGCGGcGGCAGCcGCc -3' miRNA: 3'- uGUCGU--UGUCGUCGUUcUCGUCGuUG- -5' |
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15674 | 3' | -52.3 | NC_004065.1 | + | 11310 | 0.73 | 0.801244 |
Target: 5'- uCAGCGucgccACAGaCAGCAAGuAGCGGCAc- -3' miRNA: 3'- uGUCGU-----UGUC-GUCGUUC-UCGUCGUug -5' |
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15674 | 3' | -52.3 | NC_004065.1 | + | 58311 | 0.72 | 0.810362 |
Target: 5'- gGCGGCGGCGGCGGC-GGAGgGGUc-- -3' miRNA: 3'- -UGUCGUUGUCGUCGuUCUCgUCGuug -5' |
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15674 | 3' | -52.3 | NC_004065.1 | + | 67846 | 0.72 | 0.810362 |
Target: 5'- cCAGCAGCuccGaCGGCGAGAucagcgucguGCGGCAGCg -3' miRNA: 3'- uGUCGUUGu--C-GUCGUUCU----------CGUCGUUG- -5' |
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15674 | 3' | -52.3 | NC_004065.1 | + | 50148 | 0.72 | 0.816644 |
Target: 5'- gACGGCGGguuccgucuggaGGUcgauucgAGCAAGAGCAGCGACa -3' miRNA: 3'- -UGUCGUUg-----------UCG-------UCGUUCUCGUCGUUG- -5' |
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15674 | 3' | -52.3 | NC_004065.1 | + | 195675 | 0.72 | 0.819309 |
Target: 5'- gACGGCGAC-GCGGCGGGAGC-GUAc- -3' miRNA: 3'- -UGUCGUUGuCGUCGUUCUCGuCGUug -5' |
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15674 | 3' | -52.3 | NC_004065.1 | + | 77814 | 0.72 | 0.828075 |
Target: 5'- --uGCAGCAGCuGCGGGAGC-GCAu- -3' miRNA: 3'- uguCGUUGUCGuCGUUCUCGuCGUug -5' |
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15674 | 3' | -52.3 | NC_004065.1 | + | 138546 | 0.72 | 0.828075 |
Target: 5'- cGCGGCAcgaGCGGCGGCGgacuGA-CGGCGACg -3' miRNA: 3'- -UGUCGU---UGUCGUCGUu---CUcGUCGUUG- -5' |
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15674 | 3' | -52.3 | NC_004065.1 | + | 180407 | 0.72 | 0.835804 |
Target: 5'- aACAGCAGCA--GGCAGGGGaggaagaacagaaCAGCAGCa -3' miRNA: 3'- -UGUCGUUGUcgUCGUUCUC-------------GUCGUUG- -5' |
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15674 | 3' | -52.3 | NC_004065.1 | + | 128379 | 0.72 | 0.836653 |
Target: 5'- -gGGCuuCGGCGGCGAGAGcCGGCu-- -3' miRNA: 3'- ugUCGuuGUCGUCGUUCUC-GUCGuug -5' |
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15674 | 3' | -52.3 | NC_004065.1 | + | 201171 | 0.72 | 0.840029 |
Target: 5'- cGCAGCAGCgccgacaccaAGCGGCGcgucccggcucgggcGGcGCGGCGACg -3' miRNA: 3'- -UGUCGUUG----------UCGUCGU---------------UCuCGUCGUUG- -5' |
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15674 | 3' | -52.3 | NC_004065.1 | + | 163671 | 0.72 | 0.845033 |
Target: 5'- cACAGCGGCcucaguacaaAGCAGaAGGAGC-GCAGCa -3' miRNA: 3'- -UGUCGUUG----------UCGUCgUUCUCGuCGUUG- -5' |
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15674 | 3' | -52.3 | NC_004065.1 | + | 97878 | 0.72 | 0.845033 |
Target: 5'- uGCcGCAAgGGCGGCucuucGGCAGCGGCg -3' miRNA: 3'- -UGuCGUUgUCGUCGuuc--UCGUCGUUG- -5' |
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15674 | 3' | -52.3 | NC_004065.1 | + | 103407 | 0.72 | 0.848328 |
Target: 5'- uCGGCAACAuguggaugugaaucuGCAGCAuguucGGCGGCAGCu -3' miRNA: 3'- uGUCGUUGU---------------CGUCGUuc---UCGUCGUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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