miRNA display CGI


Results 101 - 120 of 244 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15674 3' -52.3 NC_004065.1 + 178816 0.71 0.853208
Target:  5'- cACAGCAGCAGCucuGGUggGucuacuAGUAGUAGCc -3'
miRNA:   3'- -UGUCGUUGUCG---UCGuuC------UCGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 131947 0.71 0.853208
Target:  5'- gACAGgAACGGguGCAGGcgcaagaucgacAGCAGCAu- -3'
miRNA:   3'- -UGUCgUUGUCguCGUUC------------UCGUCGUug -5'
15674 3' -52.3 NC_004065.1 + 151530 0.71 0.853208
Target:  5'- --cGCccugGACGGCGGCAAGGGCcGCAAg -3'
miRNA:   3'- uguCG----UUGUCGUCGUUCUCGuCGUUg -5'
15674 3' -52.3 NC_004065.1 + 178718 0.71 0.856419
Target:  5'- -gGGCAGCGGCGGCAuaccucuucgcagagGGAGguGUGAa -3'
miRNA:   3'- ugUCGUUGUCGUCGU---------------UCUCguCGUUg -5'
15674 3' -52.3 NC_004065.1 + 33696 0.71 0.86117
Target:  5'- gUAGCcguACAGCAGCGAGAugGCguacuguauGGCGACg -3'
miRNA:   3'- uGUCGu--UGUCGUCGUUCU--CG---------UCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 65897 0.71 0.861171
Target:  5'- gGCGGCAGCGGCAGCGGGuccGuCAGguccuccuggucCAGCg -3'
miRNA:   3'- -UGUCGUUGUCGUCGUUCu--C-GUC------------GUUG- -5'
15674 3' -52.3 NC_004065.1 + 167221 0.71 0.864295
Target:  5'- gGCGGC-GCAGUcGCAGGAGUcgccggucgccggcgAGCGACg -3'
miRNA:   3'- -UGUCGuUGUCGuCGUUCUCG---------------UCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 78578 0.71 0.868914
Target:  5'- -gAGCGACAGUGGCAA---CAGCGACg -3'
miRNA:   3'- ugUCGUUGUCGUCGUUcucGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 201285 0.71 0.868914
Target:  5'- cCGGCGGCGGUGGCGAGGcgccgcgcGCAcGCGGCc -3'
miRNA:   3'- uGUCGUUGUCGUCGUUCU--------CGU-CGUUG- -5'
15674 3' -52.3 NC_004065.1 + 98410 0.71 0.868914
Target:  5'- -aGGCGGCGGUGGC---GGCGGCGACu -3'
miRNA:   3'- ugUCGUUGUCGUCGuucUCGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 190123 0.71 0.868914
Target:  5'- cGCuGcCGACGGCAGCAAaccccucGCGGCGACg -3'
miRNA:   3'- -UGuC-GUUGUCGUCGUUcu-----CGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 37160 0.71 0.876432
Target:  5'- uCGGCGGCAGCAGUGu---CAGCAACu -3'
miRNA:   3'- uGUCGUUGUCGUCGUucucGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 178774 0.71 0.876432
Target:  5'- -aAGCAACAGCAGCAGcaGGCcccuAGCAAg -3'
miRNA:   3'- ugUCGUUGUCGUCGUUc-UCG----UCGUUg -5'
15674 3' -52.3 NC_004065.1 + 23132 0.71 0.876432
Target:  5'- gGCuGCGACAGCAGCGu--GCuGCGAa -3'
miRNA:   3'- -UGuCGUUGUCGUCGUucuCGuCGUUg -5'
15674 3' -52.3 NC_004065.1 + 167955 0.71 0.876432
Target:  5'- aACuGCAGCAG-AGCucGGAGaCGGCGACg -3'
miRNA:   3'- -UGuCGUUGUCgUCGu-UCUC-GUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 113767 0.71 0.876432
Target:  5'- gACAGC-GCGGCGGCAGacgaccgacucGGGCGGCuuCu -3'
miRNA:   3'- -UGUCGuUGUCGUCGUU-----------CUCGUCGuuG- -5'
15674 3' -52.3 NC_004065.1 + 43566 0.71 0.876432
Target:  5'- aACAGCAGCAcCAGCAacaacaacAGGGCGGCn-- -3'
miRNA:   3'- -UGUCGUUGUcGUCGU--------UCUCGUCGuug -5'
15674 3' -52.3 NC_004065.1 + 185803 0.71 0.883718
Target:  5'- uGCAGC-ACGGaGGUcGGGGUAGCAGCu -3'
miRNA:   3'- -UGUCGuUGUCgUCGuUCUCGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 170709 0.71 0.883719
Target:  5'- --uGCGGCGGCAGCGAaGGCgccuccGGCGGCg -3'
miRNA:   3'- uguCGUUGUCGUCGUUcUCG------UCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 65989 0.7 0.890769
Target:  5'- uCAGCGGCAGCAGCGAGuuGUA-CGAg -3'
miRNA:   3'- uGUCGUUGUCGUCGUUCu-CGUcGUUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.