Results 121 - 140 of 244 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
15674 | 3' | -52.3 | NC_004065.1 | + | 34620 | 0.7 | 0.890769 |
Target: 5'- cCGGCAGCcgAGCGGCGgAGGGUGGCGu- -3' miRNA: 3'- uGUCGUUG--UCGUCGU-UCUCGUCGUug -5' |
|||||||
15674 | 3' | -52.3 | NC_004065.1 | + | 86963 | 0.7 | 0.897578 |
Target: 5'- gGCAGgAGgGGaagagggGGCGGGGGCGGCGGCa -3' miRNA: 3'- -UGUCgUUgUCg------UCGUUCUCGUCGUUG- -5' |
|||||||
15674 | 3' | -52.3 | NC_004065.1 | + | 127781 | 0.7 | 0.904141 |
Target: 5'- cACGGCGACGG-GGCccauGAGCAGgCGGCa -3' miRNA: 3'- -UGUCGUUGUCgUCGuu--CUCGUC-GUUG- -5' |
|||||||
15674 | 3' | -52.3 | NC_004065.1 | + | 152673 | 0.7 | 0.904141 |
Target: 5'- gGCGGCGACGGC-GCGAGGGaCA-CGAUg -3' miRNA: 3'- -UGUCGUUGUCGuCGUUCUC-GUcGUUG- -5' |
|||||||
15674 | 3' | -52.3 | NC_004065.1 | + | 67673 | 0.7 | 0.904141 |
Target: 5'- -gAGCGGCGGCGGC---GGCGGCGGg -3' miRNA: 3'- ugUCGUUGUCGUCGuucUCGUCGUUg -5' |
|||||||
15674 | 3' | -52.3 | NC_004065.1 | + | 84248 | 0.7 | 0.910457 |
Target: 5'- aGCAGCAACagaAGCAGCAguGGuaccauuuucAGUAGCAGa -3' miRNA: 3'- -UGUCGUUG---UCGUCGU--UC----------UCGUCGUUg -5' |
|||||||
15674 | 3' | -52.3 | NC_004065.1 | + | 96817 | 0.7 | 0.910457 |
Target: 5'- cGCGGCucguCGGCGGaCGAGucCAGCGACu -3' miRNA: 3'- -UGUCGuu--GUCGUC-GUUCucGUCGUUG- -5' |
|||||||
15674 | 3' | -52.3 | NC_004065.1 | + | 130078 | 0.7 | 0.910457 |
Target: 5'- cGCAGCAGCAGCcGCcgccGCGGCGGu -3' miRNA: 3'- -UGUCGUUGUCGuCGuucuCGUCGUUg -5' |
|||||||
15674 | 3' | -52.3 | NC_004065.1 | + | 224775 | 0.7 | 0.910457 |
Target: 5'- uGCucuGCAACAGCgccaccugAGC--GGGCGGCAGCa -3' miRNA: 3'- -UGu--CGUUGUCG--------UCGuuCUCGUCGUUG- -5' |
|||||||
15674 | 3' | -52.3 | NC_004065.1 | + | 97561 | 0.7 | 0.916522 |
Target: 5'- uGCuGCAGCGGguGCuugaaagacAGGGGCGGaCGGCg -3' miRNA: 3'- -UGuCGUUGUCguCG---------UUCUCGUC-GUUG- -5' |
|||||||
15674 | 3' | -52.3 | NC_004065.1 | + | 223923 | 0.69 | 0.922335 |
Target: 5'- cCAGCGGCAGCccAGgAGGAGaccgggucucguCAGCGGCa -3' miRNA: 3'- uGUCGUUGUCG--UCgUUCUC------------GUCGUUG- -5' |
|||||||
15674 | 3' | -52.3 | NC_004065.1 | + | 176344 | 0.69 | 0.922335 |
Target: 5'- cGCuuGCGGCGGCuucuCGAG-GCAGCAGCa -3' miRNA: 3'- -UGu-CGUUGUCGuc--GUUCuCGUCGUUG- -5' |
|||||||
15674 | 3' | -52.3 | NC_004065.1 | + | 1444 | 0.69 | 0.922335 |
Target: 5'- --cGUAGCAGUAGUAccccGGCAGCGGCg -3' miRNA: 3'- uguCGUUGUCGUCGUuc--UCGUCGUUG- -5' |
|||||||
15674 | 3' | -52.3 | NC_004065.1 | + | 99724 | 0.69 | 0.927351 |
Target: 5'- gACAGCGACGGCAacuuucugcaaucGCGGGcgaGGCGcGCGAUg -3' miRNA: 3'- -UGUCGUUGUCGU-------------CGUUC---UCGU-CGUUG- -5' |
|||||||
15674 | 3' | -52.3 | NC_004065.1 | + | 21741 | 0.69 | 0.927895 |
Target: 5'- uGCGGCAACAGCGGCAccuGCGuGUggAACu -3' miRNA: 3'- -UGUCGUUGUCGUCGUucuCGU-CG--UUG- -5' |
|||||||
15674 | 3' | -52.3 | NC_004065.1 | + | 62581 | 0.69 | 0.927895 |
Target: 5'- gACAGCAGCAGcCAGUAGGuuAGC-GCcGCc -3' miRNA: 3'- -UGUCGUUGUC-GUCGUUC--UCGuCGuUG- -5' |
|||||||
15674 | 3' | -52.3 | NC_004065.1 | + | 70504 | 0.69 | 0.927895 |
Target: 5'- -aGGCGAUGGCGGCGcccuucucgacGGAGCuGCAGg -3' miRNA: 3'- ugUCGUUGUCGUCGU-----------UCUCGuCGUUg -5' |
|||||||
15674 | 3' | -52.3 | NC_004065.1 | + | 120555 | 0.69 | 0.933201 |
Target: 5'- cCGGCGGCGGuCGGCGcGAGCgGGCGGg -3' miRNA: 3'- uGUCGUUGUC-GUCGUuCUCG-UCGUUg -5' |
|||||||
15674 | 3' | -52.3 | NC_004065.1 | + | 110166 | 0.69 | 0.935252 |
Target: 5'- gACGGCGGCcGCGGCGgacgagccgGGAccccccgacgcggccGCGGCGACg -3' miRNA: 3'- -UGUCGUUGuCGUCGU---------UCU---------------CGUCGUUG- -5' |
|||||||
15674 | 3' | -52.3 | NC_004065.1 | + | 127220 | 0.69 | 0.93776 |
Target: 5'- -gAGCGGCGGCcGCGAGGaucgggcGCGGUGGCg -3' miRNA: 3'- ugUCGUUGUCGuCGUUCU-------CGUCGUUG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home