miRNA display CGI


Results 81 - 100 of 244 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15674 3' -52.3 NC_004065.1 + 124523 0.68 0.95597
Target:  5'- cGCAGUAcCAGCGGUgcGA-CGGCGGCu -3'
miRNA:   3'- -UGUCGUuGUCGUCGuuCUcGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 217329 0.68 0.95597
Target:  5'- cCAGCGugACGGCGGCuGGAaacuuuCGGCAACg -3'
miRNA:   3'- uGUCGU--UGUCGUCGuUCUc-----GUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 229657 0.68 0.95597
Target:  5'- cCGGCGGCAGUGGCAGGugGGCGucGgGGCg -3'
miRNA:   3'- uGUCGUUGUCGUCGUUC--UCGU--CgUUG- -5'
15674 3' -52.3 NC_004065.1 + 49150 0.68 0.95191
Target:  5'- -uGGCGGCGGCGGgGAGAGaaaacguagGGUAACa -3'
miRNA:   3'- ugUCGUUGUCGUCgUUCUCg--------UCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 189446 0.68 0.95191
Target:  5'- aACGGCAGCGGCAuGUuguuGGGUcucGGCAAUa -3'
miRNA:   3'- -UGUCGUUGUCGU-CGuu--CUCG---UCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 135057 0.68 0.95191
Target:  5'- -aGGCGuacGCGGCAGCcgcGGAGCGggccccGCAGCg -3'
miRNA:   3'- ugUCGU---UGUCGUCGu--UCUCGU------CGUUG- -5'
15674 3' -52.3 NC_004065.1 + 126661 0.68 0.95191
Target:  5'- gACGGCGucggcguuCAGCAGCuuGucCAGCAGCg -3'
miRNA:   3'- -UGUCGUu-------GUCGUCGuuCucGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 86274 0.68 0.95191
Target:  5'- aACGGUAgaucuGCuGCccgAGCuGGGGCAGCAGCu -3'
miRNA:   3'- -UGUCGU-----UGuCG---UCGuUCUCGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 54707 0.68 0.95191
Target:  5'- cGCGGCAgaccgcgcgcgaACAGCgAGCGAGAGgcugaGGCGAa -3'
miRNA:   3'- -UGUCGU------------UGUCG-UCGUUCUCg----UCGUUg -5'
15674 3' -52.3 NC_004065.1 + 78663 0.69 0.947606
Target:  5'- cCAGC-GCAGCGGCcGGcGCcGCGGCg -3'
miRNA:   3'- uGUCGuUGUCGUCGuUCuCGuCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 228306 0.69 0.947606
Target:  5'- gACAGCAACAGaa--AAGA-CGGCAACg -3'
miRNA:   3'- -UGUCGUUGUCgucgUUCUcGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 75330 0.69 0.947606
Target:  5'- uACcuCAGgAGCGGCAuGAGCAGCcGCc -3'
miRNA:   3'- -UGucGUUgUCGUCGUuCUCGUCGuUG- -5'
15674 3' -52.3 NC_004065.1 + 225800 0.69 0.947606
Target:  5'- --cGCAACAGUcGCcauuGAGGGCcAGCAGCu -3'
miRNA:   3'- uguCGUUGUCGuCG----UUCUCG-UCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 119516 0.69 0.946267
Target:  5'- uCAGCAugGGCGGCGcggggacguggucgAGGGCcagGGCGAa -3'
miRNA:   3'- uGUCGUugUCGUCGU--------------UCUCG---UCGUUg -5'
15674 3' -52.3 NC_004065.1 + 28793 0.69 0.946267
Target:  5'- uGCGGCGcaGCAuGCGGCGGGcgcuacucucgucaGGCAGCGGg -3'
miRNA:   3'- -UGUCGU--UGU-CGUCGUUC--------------UCGUCGUUg -5'
15674 3' -52.3 NC_004065.1 + 134028 0.69 0.943055
Target:  5'- aAguGCGAUGGCGGCGGaGGCuGCGAUa -3'
miRNA:   3'- -UguCGUUGUCGUCGUUcUCGuCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 128416 0.69 0.943055
Target:  5'- aACAGCGGCuGGCGGCccggcGAGC-GUAACg -3'
miRNA:   3'- -UGUCGUUG-UCGUCGuu---CUCGuCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 72509 0.69 0.943055
Target:  5'- aGguGgAACGGCAGguGGuGCuGCGACa -3'
miRNA:   3'- -UguCgUUGUCGUCguUCuCGuCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 208737 0.69 0.943055
Target:  5'- cGCGGgAACGGCgAGCAgauAGAGCAaGgAACa -3'
miRNA:   3'- -UGUCgUUGUCG-UCGU---UCUCGU-CgUUG- -5'
15674 3' -52.3 NC_004065.1 + 150953 0.69 0.942586
Target:  5'- cCGGCGGCGGUucgugcgcgcggaGGaCGAGGGCGGCGcgGCg -3'
miRNA:   3'- uGUCGUUGUCG-------------UC-GUUCUCGUCGU--UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.