miRNA display CGI


Results 101 - 120 of 244 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15674 3' -52.3 NC_004065.1 + 216880 0.69 0.938254
Target:  5'- gACGGUcguucGCGGCGGCGcGAGguGCGAg -3'
miRNA:   3'- -UGUCGu----UGUCGUCGUuCUCguCGUUg -5'
15674 3' -52.3 NC_004065.1 + 154017 0.69 0.938254
Target:  5'- cGCGGCGGCGGCGGCGacguugucaucgAGAGgUAGUGGa -3'
miRNA:   3'- -UGUCGUUGUCGUCGU------------UCUC-GUCGUUg -5'
15674 3' -52.3 NC_004065.1 + 114700 0.69 0.938254
Target:  5'- uCAGCAGCAGCcccucuacaGGgGAGAGaggaauaGGCGGCg -3'
miRNA:   3'- uGUCGUUGUCG---------UCgUUCUCg------UCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 56636 0.69 0.938254
Target:  5'- uGCGGUGGCAGCGGCc---GCGGCAc- -3'
miRNA:   3'- -UGUCGUUGUCGUCGuucuCGUCGUug -5'
15674 3' -52.3 NC_004065.1 + 127220 0.69 0.93776
Target:  5'- -gAGCGGCGGCcGCGAGGaucgggcGCGGUGGCg -3'
miRNA:   3'- ugUCGUUGUCGuCGUUCU-------CGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 110166 0.69 0.935252
Target:  5'- gACGGCGGCcGCGGCGgacgagccgGGAccccccgacgcggccGCGGCGACg -3'
miRNA:   3'- -UGUCGUUGuCGUCGU---------UCU---------------CGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 120555 0.69 0.933201
Target:  5'- cCGGCGGCGGuCGGCGcGAGCgGGCGGg -3'
miRNA:   3'- uGUCGUUGUC-GUCGUuCUCG-UCGUUg -5'
15674 3' -52.3 NC_004065.1 + 70504 0.69 0.927895
Target:  5'- -aGGCGAUGGCGGCGcccuucucgacGGAGCuGCAGg -3'
miRNA:   3'- ugUCGUUGUCGUCGU-----------UCUCGuCGUUg -5'
15674 3' -52.3 NC_004065.1 + 21741 0.69 0.927895
Target:  5'- uGCGGCAACAGCGGCAccuGCGuGUggAACu -3'
miRNA:   3'- -UGUCGUUGUCGUCGUucuCGU-CG--UUG- -5'
15674 3' -52.3 NC_004065.1 + 62581 0.69 0.927895
Target:  5'- gACAGCAGCAGcCAGUAGGuuAGC-GCcGCc -3'
miRNA:   3'- -UGUCGUUGUC-GUCGUUC--UCGuCGuUG- -5'
15674 3' -52.3 NC_004065.1 + 99724 0.69 0.927351
Target:  5'- gACAGCGACGGCAacuuucugcaaucGCGGGcgaGGCGcGCGAUg -3'
miRNA:   3'- -UGUCGUUGUCGU-------------CGUUC---UCGU-CGUUG- -5'
15674 3' -52.3 NC_004065.1 + 1444 0.69 0.922335
Target:  5'- --cGUAGCAGUAGUAccccGGCAGCGGCg -3'
miRNA:   3'- uguCGUUGUCGUCGUuc--UCGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 176344 0.69 0.922335
Target:  5'- cGCuuGCGGCGGCuucuCGAG-GCAGCAGCa -3'
miRNA:   3'- -UGu-CGUUGUCGuc--GUUCuCGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 223923 0.69 0.922335
Target:  5'- cCAGCGGCAGCccAGgAGGAGaccgggucucguCAGCGGCa -3'
miRNA:   3'- uGUCGUUGUCG--UCgUUCUC------------GUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 97561 0.7 0.916522
Target:  5'- uGCuGCAGCGGguGCuugaaagacAGGGGCGGaCGGCg -3'
miRNA:   3'- -UGuCGUUGUCguCG---------UUCUCGUC-GUUG- -5'
15674 3' -52.3 NC_004065.1 + 84248 0.7 0.910457
Target:  5'- aGCAGCAACagaAGCAGCAguGGuaccauuuucAGUAGCAGa -3'
miRNA:   3'- -UGUCGUUG---UCGUCGU--UC----------UCGUCGUUg -5'
15674 3' -52.3 NC_004065.1 + 224775 0.7 0.910457
Target:  5'- uGCucuGCAACAGCgccaccugAGC--GGGCGGCAGCa -3'
miRNA:   3'- -UGu--CGUUGUCG--------UCGuuCUCGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 130078 0.7 0.910457
Target:  5'- cGCAGCAGCAGCcGCcgccGCGGCGGu -3'
miRNA:   3'- -UGUCGUUGUCGuCGuucuCGUCGUUg -5'
15674 3' -52.3 NC_004065.1 + 96817 0.7 0.910457
Target:  5'- cGCGGCucguCGGCGGaCGAGucCAGCGACu -3'
miRNA:   3'- -UGUCGuu--GUCGUC-GUUCucGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 127781 0.7 0.904141
Target:  5'- cACGGCGACGG-GGCccauGAGCAGgCGGCa -3'
miRNA:   3'- -UGUCGUUGUCgUCGuu--CUCGUC-GUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.