miRNA display CGI


Results 61 - 80 of 244 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15674 3' -52.3 NC_004065.1 + 59149 0.65 0.990188
Target:  5'- -aGGCGACGaCGGCGAGAguccgaucgggcgcGCGGCGAa -3'
miRNA:   3'- ugUCGUUGUcGUCGUUCU--------------CGUCGUUg -5'
15674 3' -52.3 NC_004065.1 + 60719 0.66 0.987776
Target:  5'- -gGGC-GCGGCAGuCGAGAGCuccGuCGACg -3'
miRNA:   3'- ugUCGuUGUCGUC-GUUCUCGu--C-GUUG- -5'
15674 3' -52.3 NC_004065.1 + 61518 0.73 0.791963
Target:  5'- cGCGGCGACAGCAucccGCAGGcgaucGCAGUcGCg -3'
miRNA:   3'- -UGUCGUUGUCGU----CGUUCu----CGUCGuUG- -5'
15674 3' -52.3 NC_004065.1 + 62088 0.8 0.419506
Target:  5'- -gGGCGACGGCAGC---GGCAGCGGCg -3'
miRNA:   3'- ugUCGUUGUCGUCGuucUCGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 62282 0.77 0.566515
Target:  5'- cCAGCAGCAGCAGCGauggcgaccGGGGgAGaCGACg -3'
miRNA:   3'- uGUCGUUGUCGUCGU---------UCUCgUC-GUUG- -5'
15674 3' -52.3 NC_004065.1 + 62368 0.81 0.384292
Target:  5'- gACGGCggUGGCGGCGGGGGUGGUGGCg -3'
miRNA:   3'- -UGUCGuuGUCGUCGUUCUCGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 62476 0.75 0.661013
Target:  5'- gACGGCAGgAGCGGCcgcGGCGGUAGCg -3'
miRNA:   3'- -UGUCGUUgUCGUCGuucUCGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 62581 0.69 0.927895
Target:  5'- gACAGCAGCAGcCAGUAGGuuAGC-GCcGCc -3'
miRNA:   3'- -UGUCGUUGUC-GUCGUUC--UCGuCGuUG- -5'
15674 3' -52.3 NC_004065.1 + 62618 0.85 0.22191
Target:  5'- cCGGCGGCAGCAGCcgcGGCAGCAGCa -3'
miRNA:   3'- uGUCGUUGUCGUCGuucUCGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 62647 0.8 0.39291
Target:  5'- gACAGCAGCauuGGCGGCgGAGAcgGCAGCGGCg -3'
miRNA:   3'- -UGUCGUUG---UCGUCG-UUCU--CGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 62864 0.77 0.545857
Target:  5'- cGCGGCuGCuGCcgccGGCGGGGGCGGCGGCg -3'
miRNA:   3'- -UGUCGuUGuCG----UCGUUCUCGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 63776 0.66 0.986156
Target:  5'- cGCGGCGaucuACGGCcGCGAGGGCgaGGCc-- -3'
miRNA:   3'- -UGUCGU----UGUCGuCGUUCUCG--UCGuug -5'
15674 3' -52.3 NC_004065.1 + 64532 0.78 0.535618
Target:  5'- cGCAGCAGCuGCGGCGcGA-CGGCGACa -3'
miRNA:   3'- -UGUCGUUGuCGUCGUuCUcGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 65897 0.71 0.861171
Target:  5'- gGCGGCAGCGGCAGCGGGuccGuCAGguccuccuggucCAGCg -3'
miRNA:   3'- -UGUCGUUGUCGUCGUUCu--C-GUC------------GUUG- -5'
15674 3' -52.3 NC_004065.1 + 65989 0.7 0.890769
Target:  5'- uCAGCGGCAGCAGCGAGuuGUA-CGAg -3'
miRNA:   3'- uGUCGUUGUCGUCGUUCu-CGUcGUUg -5'
15674 3' -52.3 NC_004065.1 + 66325 0.66 0.98243
Target:  5'- gGCGGaCAACgcggAGCuGgAGGAGCGGCuGCg -3'
miRNA:   3'- -UGUC-GUUG----UCGuCgUUCUCGUCGuUG- -5'
15674 3' -52.3 NC_004065.1 + 67673 0.7 0.904141
Target:  5'- -gAGCGGCGGCGGC---GGCGGCGGg -3'
miRNA:   3'- ugUCGUUGUCGUCGuucUCGUCGUUg -5'
15674 3' -52.3 NC_004065.1 + 67846 0.72 0.810362
Target:  5'- cCAGCAGCuccGaCGGCGAGAucagcgucguGCGGCAGCg -3'
miRNA:   3'- uGUCGUUGu--C-GUCGUUCU----------CGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 68579 0.73 0.78253
Target:  5'- aGCAacGCGGCGGCGGCGauccAGAGCGcCGACa -3'
miRNA:   3'- -UGU--CGUUGUCGUCGU----UCUCGUcGUUG- -5'
15674 3' -52.3 NC_004065.1 + 68591 0.73 0.78253
Target:  5'- gGCAGCugcuGCAGCAGCucccGCAGCcACg -3'
miRNA:   3'- -UGUCGu---UGUCGUCGuucuCGUCGuUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.