miRNA display CGI


Results 81 - 100 of 244 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15674 3' -52.3 NC_004065.1 + 69034 0.66 0.98323
Target:  5'- gAUAGCAGCAGCAGCccgccgccgccgGAGAugcuggauauguuacGCAcGCAGa -3'
miRNA:   3'- -UGUCGUUGUCGUCG------------UUCU---------------CGU-CGUUg -5'
15674 3' -52.3 NC_004065.1 + 69300 0.67 0.977995
Target:  5'- cCAGCAucucCGGCGGCGGcGGGCuGCuGCu -3'
miRNA:   3'- uGUCGUu---GUCGUCGUU-CUCGuCGuUG- -5'
15674 3' -52.3 NC_004065.1 + 70107 0.85 0.227564
Target:  5'- aGCAGCAcCGGCAGCGGcGGCGGCGGCg -3'
miRNA:   3'- -UGUCGUuGUCGUCGUUcUCGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 70445 0.68 0.966733
Target:  5'- cCGGCAGCAGCAccuucugcuGCcAGccCAGCAACg -3'
miRNA:   3'- uGUCGUUGUCGU---------CGuUCucGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 70504 0.69 0.927895
Target:  5'- -aGGCGAUGGCGGCGcccuucucgacGGAGCuGCAGg -3'
miRNA:   3'- ugUCGUUGUCGUCGU-----------UCUCGuCGUUg -5'
15674 3' -52.3 NC_004065.1 + 71251 0.67 0.972783
Target:  5'- cCAGCAuCAGCuGCAGGuucGaCAGCGAUu -3'
miRNA:   3'- uGUCGUuGUCGuCGUUCu--C-GUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 71673 0.92 0.087936
Target:  5'- uCAGCAGCAGCAGCGGcGGCGGCAACg -3'
miRNA:   3'- uGUCGUUGUCGUCGUUcUCGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 72509 0.69 0.943055
Target:  5'- aGguGgAACGGCAGguGGuGCuGCGACa -3'
miRNA:   3'- -UguCgUUGUCGUCguUCuCGuCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 72818 0.68 0.966733
Target:  5'- cCAGCAccGCuucuuGCuGCGAGAacucguccaGCAGCGACa -3'
miRNA:   3'- uGUCGU--UGu----CGuCGUUCU---------CGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 73936 0.78 0.50933
Target:  5'- aGCGGCGGCAGCAGCAagaaagaagaggaaaGGAGgaAGCAAUu -3'
miRNA:   3'- -UGUCGUUGUCGUCGU---------------UCUCg-UCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 73978 0.86 0.190455
Target:  5'- gGCGGCAGCAGUGGCGccAGCAGCGGCg -3'
miRNA:   3'- -UGUCGUUGUCGUCGUucUCGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 74862 0.66 0.984377
Target:  5'- -aGGCGGCGGUGGUAGacGGGCAggucGCAGCc -3'
miRNA:   3'- ugUCGUUGUCGUCGUU--CUCGU----CGUUG- -5'
15674 3' -52.3 NC_004065.1 + 75330 0.69 0.947606
Target:  5'- uACcuCAGgAGCGGCAuGAGCAGCcGCc -3'
miRNA:   3'- -UGucGUUgUCGUCGUuCUCGUCGuUG- -5'
15674 3' -52.3 NC_004065.1 + 75482 0.66 0.986156
Target:  5'- -gGGCGaugGCGGCGGCGAGGaucagggcGCAGUGAa -3'
miRNA:   3'- ugUCGU---UGUCGUCGUUCU--------CGUCGUUg -5'
15674 3' -52.3 NC_004065.1 + 75784 0.8 0.401653
Target:  5'- gGCGGCGGuCGGCgAGgGGGAGCGGCGGCg -3'
miRNA:   3'- -UGUCGUU-GUCG-UCgUUCUCGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 76654 0.75 0.661014
Target:  5'- gGCGGCGccacucggACGGCGGCGAGcucauccGCGGCGGCg -3'
miRNA:   3'- -UGUCGU--------UGUCGUCGUUCu------CGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 77504 0.67 0.980305
Target:  5'- cCGGCGcCGGCGGagcccgAGGAGCuGCGGCu -3'
miRNA:   3'- uGUCGUuGUCGUCg-----UUCUCGuCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 77814 0.72 0.828075
Target:  5'- --uGCAGCAGCuGCGGGAGC-GCAu- -3'
miRNA:   3'- uguCGUUGUCGuCGUUCUCGuCGUug -5'
15674 3' -52.3 NC_004065.1 + 78578 0.71 0.868914
Target:  5'- -gAGCGACAGUGGCAA---CAGCGACg -3'
miRNA:   3'- ugUCGUUGUCGUCGUUcucGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 78663 0.69 0.947606
Target:  5'- cCAGC-GCAGCGGCcGGcGCcGCGGCg -3'
miRNA:   3'- uGUCGuUGUCGUCGuUCuCGuCGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.