miRNA display CGI


Results 101 - 120 of 244 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15674 3' -52.3 NC_004065.1 + 84248 0.7 0.910457
Target:  5'- aGCAGCAACagaAGCAGCAguGGuaccauuuucAGUAGCAGa -3'
miRNA:   3'- -UGUCGUUG---UCGUCGU--UC----------UCGUCGUUg -5'
15674 3' -52.3 NC_004065.1 + 86274 0.68 0.95191
Target:  5'- aACGGUAgaucuGCuGCccgAGCuGGGGCAGCAGCu -3'
miRNA:   3'- -UGUCGU-----UGuCG---UCGuUCUCGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 86963 0.7 0.897578
Target:  5'- gGCAGgAGgGGaagagggGGCGGGGGCGGCGGCa -3'
miRNA:   3'- -UGUCgUUgUCg------UCGUUCUCGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 87011 0.76 0.608357
Target:  5'- cGCGGCGgggGCGGCAGCuucAAGGGCcgaGGCGGCg -3'
miRNA:   3'- -UGUCGU---UGUCGUCG---UUCUCG---UCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 87784 0.66 0.987776
Target:  5'- -aAGCccuGCAGCAGCAucuccauguagAGGGuCAGCAc- -3'
miRNA:   3'- ugUCGu--UGUCGUCGU-----------UCUC-GUCGUug -5'
15674 3' -52.3 NC_004065.1 + 88616 0.66 0.98243
Target:  5'- uGCcGCGGCcGCGGaCGAGAGCGGUc-- -3'
miRNA:   3'- -UGuCGUUGuCGUC-GUUCUCGUCGuug -5'
15674 3' -52.3 NC_004065.1 + 88676 0.73 0.763244
Target:  5'- --cGCGACGGCGGCGGGcuccgcugccGGCGGUGGCg -3'
miRNA:   3'- uguCGUUGUCGUCGUUC----------UCGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 89311 0.67 0.977994
Target:  5'- -gAGC-GCGGCAGCGAGuucuGCAG-GACg -3'
miRNA:   3'- ugUCGuUGUCGUCGUUCu---CGUCgUUG- -5'
15674 3' -52.3 NC_004065.1 + 89390 0.67 0.969866
Target:  5'- gGCAGCGGaagAGCAGgaAGGAGaGGCAGCc -3'
miRNA:   3'- -UGUCGUUg--UCGUCg-UUCUCgUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 90249 0.66 0.989244
Target:  5'- uCGGCGAaGGCccGCGAGAGCAGaguGACc -3'
miRNA:   3'- uGUCGUUgUCGu-CGUUCUCGUCg--UUG- -5'
15674 3' -52.3 NC_004065.1 + 90361 0.67 0.981177
Target:  5'- gACAGCAGCGGCcgccGCAcgcgccgcacagcuuGGAGcCGGCGu- -3'
miRNA:   3'- -UGUCGUUGUCGu---CGU---------------UCUC-GUCGUug -5'
15674 3' -52.3 NC_004065.1 + 90420 0.74 0.733413
Target:  5'- gACGGCGGaGGCGGC-GGAGCcGGCGGCa -3'
miRNA:   3'- -UGUCGUUgUCGUCGuUCUCG-UCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 96763 0.67 0.969866
Target:  5'- -gGGCGACGGCGGa---GGCGGCAucGCg -3'
miRNA:   3'- ugUCGUUGUCGUCguucUCGUCGU--UG- -5'
15674 3' -52.3 NC_004065.1 + 96817 0.7 0.910457
Target:  5'- cGCGGCucguCGGCGGaCGAGucCAGCGACu -3'
miRNA:   3'- -UGUCGuu--GUCGUC-GUUCucGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 97222 0.78 0.485556
Target:  5'- gACGGcCGGC-GCAGCAGGcGCGGCAGCa -3'
miRNA:   3'- -UGUC-GUUGuCGUCGUUCuCGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 97258 0.9 0.115369
Target:  5'- aGCAGCAGCGGCAGC-AGAcgucGCAGCAGCg -3'
miRNA:   3'- -UGUCGUUGUCGUCGuUCU----CGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 97339 0.78 0.51535
Target:  5'- cGCGGagaCAGCAGCAGCAccAGCAGCAAUc -3'
miRNA:   3'- -UGUC---GUUGUCGUCGUucUCGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 97561 0.7 0.916522
Target:  5'- uGCuGCAGCGGguGCuugaaagacAGGGGCGGaCGGCg -3'
miRNA:   3'- -UGuCGUUGUCguCG---------UUCUCGUC-GUUG- -5'
15674 3' -52.3 NC_004065.1 + 97878 0.72 0.845033
Target:  5'- uGCcGCAAgGGCGGCucuucGGCAGCGGCg -3'
miRNA:   3'- -UGuCGUUgUCGUCGuuc--UCGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 97945 0.75 0.691342
Target:  5'- cCGGCGGCAGCGcgucgaagugcuuGCGgaAGAGCAGCAGa -3'
miRNA:   3'- uGUCGUUGUCGU-------------CGU--UCUCGUCGUUg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.