miRNA display CGI


Results 121 - 140 of 244 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15674 3' -52.3 NC_004065.1 + 97953 0.75 0.681966
Target:  5'- gACAGCccgGGCGGCGGC---GGCAGCGACc -3'
miRNA:   3'- -UGUCG---UUGUCGUCGuucUCGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 98410 0.71 0.868914
Target:  5'- -aGGCGGCGGUGGC---GGCGGCGACu -3'
miRNA:   3'- ugUCGUUGUCGUCGuucUCGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 99127 0.66 0.987776
Target:  5'- gACGGCAacGCAGguGCGGccgacGGCGGUAAa -3'
miRNA:   3'- -UGUCGU--UGUCguCGUUc----UCGUCGUUg -5'
15674 3' -52.3 NC_004065.1 + 99404 0.78 0.535618
Target:  5'- gACAGguGCGcucGCAGCAGGGGCccgAGCGGCa -3'
miRNA:   3'- -UGUCguUGU---CGUCGUUCUCG---UCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 99421 0.78 0.51535
Target:  5'- aGguGCAGCAGCAGCuGGAgGCGGCcACg -3'
miRNA:   3'- -UguCGUUGUCGUCGuUCU-CGUCGuUG- -5'
15674 3' -52.3 NC_004065.1 + 99724 0.69 0.927351
Target:  5'- gACAGCGACGGCAacuuucugcaaucGCGGGcgaGGCGcGCGAUg -3'
miRNA:   3'- -UGUCGUUGUCGU-------------CGUUC---UCGU-CGUUG- -5'
15674 3' -52.3 NC_004065.1 + 100283 0.73 0.772954
Target:  5'- cGCGGgGGCGGCGGaCGAGgcgaugcuguacGGCGGCGGCg -3'
miRNA:   3'- -UGUCgUUGUCGUC-GUUC------------UCGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 100640 0.81 0.375799
Target:  5'- uCGGCGGCAGCGGCGAGAaCAGgGACu -3'
miRNA:   3'- uGUCGUUGUCGUCGUUCUcGUCgUUG- -5'
15674 3' -52.3 NC_004065.1 + 100758 0.67 0.972783
Target:  5'- gUAGCcGCGGUAGCuguGGGGCGGgcuCAGCu -3'
miRNA:   3'- uGUCGuUGUCGUCGu--UCUCGUC---GUUG- -5'
15674 3' -52.3 NC_004065.1 + 103299 0.66 0.989244
Target:  5'- -aGGCccGCGGCGGCAGGcuCAGCGGu -3'
miRNA:   3'- ugUCGu-UGUCGUCGUUCucGUCGUUg -5'
15674 3' -52.3 NC_004065.1 + 103407 0.72 0.848328
Target:  5'- uCGGCAACAuguggaugugaaucuGCAGCAuguucGGCGGCAGCu -3'
miRNA:   3'- uGUCGUUGU---------------CGUCGUuc---UCGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 104876 0.66 0.984377
Target:  5'- uACGGUggaGACGGUAGUAGGAcCAGUAAa -3'
miRNA:   3'- -UGUCG---UUGUCGUCGUUCUcGUCGUUg -5'
15674 3' -52.3 NC_004065.1 + 104980 0.66 0.98243
Target:  5'- -gAGUAACGGCuGaUGAGAGUcGCAACg -3'
miRNA:   3'- ugUCGUUGUCGuC-GUUCUCGuCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 109242 0.73 0.763243
Target:  5'- gGCGGCggUAGCGGCGucgguGAcgaugacgacucGCGGCAGCa -3'
miRNA:   3'- -UGUCGuuGUCGUCGUu----CU------------CGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 110101 0.67 0.97389
Target:  5'- cCGGCAccuGCGcgauggccccccgccGCAGCAGGA-CGGCGACg -3'
miRNA:   3'- uGUCGU---UGU---------------CGUCGUUCUcGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 110166 0.69 0.935252
Target:  5'- gACGGCGGCcGCGGCGgacgagccgGGAccccccgacgcggccGCGGCGACg -3'
miRNA:   3'- -UGUCGUUGuCGUCGU---------UCU---------------CGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 110735 0.67 0.97549
Target:  5'- gGCGGCcgucugcuGCAGCAGCAu--GUAGuCGACg -3'
miRNA:   3'- -UGUCGu-------UGUCGUCGUucuCGUC-GUUG- -5'
15674 3' -52.3 NC_004065.1 + 111418 0.68 0.957527
Target:  5'- -aGGCGGCAGUAGgGuucggugaccuuagaGGGGCAGaCGACg -3'
miRNA:   3'- ugUCGUUGUCGUCgU---------------UCUCGUC-GUUG- -5'
15674 3' -52.3 NC_004065.1 + 113409 0.66 0.985986
Target:  5'- --cGCGACgucguggccagggAGCuGCGcAGAGCGGCGGCc -3'
miRNA:   3'- uguCGUUG-------------UCGuCGU-UCUCGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 113767 0.71 0.876432
Target:  5'- gACAGC-GCGGCGGCAGacgaccgacucGGGCGGCuuCu -3'
miRNA:   3'- -UGUCGuUGUCGUCGUU-----------CUCGUCGuuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.