miRNA display CGI


Results 41 - 60 of 244 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15674 3' -52.3 NC_004065.1 + 167955 0.71 0.876432
Target:  5'- aACuGCAGCAG-AGCucGGAGaCGGCGACg -3'
miRNA:   3'- -UGuCGUUGUCgUCGu-UCUC-GUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 167221 0.71 0.864295
Target:  5'- gGCGGC-GCAGUcGCAGGAGUcgccggucgccggcgAGCGACg -3'
miRNA:   3'- -UGUCGuUGUCGuCGUUCUCG---------------UCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 166733 0.68 0.959791
Target:  5'- -gAGCucgAugGGCAGCGGGAGCucgccGUAGCu -3'
miRNA:   3'- ugUCG---UugUCGUCGUUCUCGu----CGUUG- -5'
15674 3' -52.3 NC_004065.1 + 166456 0.77 0.587367
Target:  5'- aGCAGCAcgagcACGGaCAGCAcGGGCGGUGACa -3'
miRNA:   3'- -UGUCGU-----UGUC-GUCGUuCUCGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 166138 0.67 0.977994
Target:  5'- gGCAGaGACGuCGGCGccGGCGGCAGCg -3'
miRNA:   3'- -UGUCgUUGUcGUCGUucUCGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 164951 0.81 0.384292
Target:  5'- cCGGCGGCGGCGGCGGcAGCAGCuGCg -3'
miRNA:   3'- uGUCGUUGUCGUCGUUcUCGUCGuUG- -5'
15674 3' -52.3 NC_004065.1 + 164841 0.66 0.986156
Target:  5'- aGCGGCGGCcguGGUGGCucuGGAGC-GCGAa -3'
miRNA:   3'- -UGUCGUUG---UCGUCGu--UCUCGuCGUUg -5'
15674 3' -52.3 NC_004065.1 + 164223 0.67 0.976515
Target:  5'- aGCcGCAugACGGCGGUgaagucgggaucugaGGGAGCGgGCAACa -3'
miRNA:   3'- -UGuCGU--UGUCGUCG---------------UUCUCGU-CGUUG- -5'
15674 3' -52.3 NC_004065.1 + 163671 0.72 0.845033
Target:  5'- cACAGCGGCcucaguacaaAGCAGaAGGAGC-GCAGCa -3'
miRNA:   3'- -UGUCGUUG----------UCGUCgUUCUCGuCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 163639 0.9 0.109309
Target:  5'- aGCGGCGGCGGCGGCGGcAGCGGCAGCg -3'
miRNA:   3'- -UGUCGUUGUCGUCGUUcUCGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 163479 0.67 0.980305
Target:  5'- -gAGCuccguCGGCGGCGccGGuGGCGGCGGCu -3'
miRNA:   3'- ugUCGuu---GUCGUCGU--UC-UCGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 161015 0.66 0.98419
Target:  5'- aGCAGUAcgagGCGGCAucgacguGCAGGGGcCGGuCGACg -3'
miRNA:   3'- -UGUCGU----UGUCGU-------CGUUCUC-GUC-GUUG- -5'
15674 3' -52.3 NC_004065.1 + 159942 0.77 0.556158
Target:  5'- gGCGGCGACGGCGGCGAGgAGC-GCcuCg -3'
miRNA:   3'- -UGUCGUUGUCGUCGUUC-UCGuCGuuG- -5'
15674 3' -52.3 NC_004065.1 + 154153 0.83 0.290984
Target:  5'- gGCGGUGGCGGCGGCGGcGGCGGCGGCu -3'
miRNA:   3'- -UGUCGUUGUCGUCGUUcUCGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 154017 0.69 0.938254
Target:  5'- cGCGGCGGCGGCGGCGacguugucaucgAGAGgUAGUGGa -3'
miRNA:   3'- -UGUCGUUGUCGUCGU------------UCUC-GUCGUUg -5'
15674 3' -52.3 NC_004065.1 + 152673 0.7 0.904141
Target:  5'- gGCGGCGACGGC-GCGAGGGaCA-CGAUg -3'
miRNA:   3'- -UGUCGUUGUCGuCGUUCUC-GUcGUUG- -5'
15674 3' -52.3 NC_004065.1 + 152304 0.75 0.661013
Target:  5'- uGCGGCGGCGGCGGUGccGGCGGgGACg -3'
miRNA:   3'- -UGUCGUUGUCGUCGUucUCGUCgUUG- -5'
15674 3' -52.3 NC_004065.1 + 151530 0.71 0.853208
Target:  5'- --cGCccugGACGGCGGCAAGGGCcGCAAg -3'
miRNA:   3'- uguCG----UUGUCGUCGUUCUCGuCGUUg -5'
15674 3' -52.3 NC_004065.1 + 151117 0.8 0.419506
Target:  5'- gACGaCGGCAGCAGCGAaGGCGGCGGCa -3'
miRNA:   3'- -UGUcGUUGUCGUCGUUcUCGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 150953 0.69 0.942586
Target:  5'- cCGGCGGCGGUucgugcgcgcggaGGaCGAGGGCGGCGcgGCg -3'
miRNA:   3'- uGUCGUUGUCG-------------UC-GUUCUCGUCGU--UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.