miRNA display CGI


Results 61 - 80 of 244 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15674 3' -52.3 NC_004065.1 + 149475 1.04 0.013795
Target:  5'- gGCGGCGGCGGCAGCGGGAGCAGCGACa -3'
miRNA:   3'- -UGUCGUUGUCGUCGUUCUCGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 148638 0.73 0.801244
Target:  5'- gACAGCGGCAGCgacucgauGGCGAacAGCAGCAuGCa -3'
miRNA:   3'- -UGUCGUUGUCG--------UCGUUc-UCGUCGU-UG- -5'
15674 3' -52.3 NC_004065.1 + 141674 0.67 0.972783
Target:  5'- gGCAGCGACGaCAuGCGGGAGCcuauGGCGc- -3'
miRNA:   3'- -UGUCGUUGUcGU-CGUUCUCG----UCGUug -5'
15674 3' -52.3 NC_004065.1 + 141622 0.66 0.984377
Target:  5'- uGCAGCAugAGCGGCuugAAG-GCGGgAu- -3'
miRNA:   3'- -UGUCGUugUCGUCG---UUCuCGUCgUug -5'
15674 3' -52.3 NC_004065.1 + 140184 0.76 0.608357
Target:  5'- aACAaCAACAGCGGCAGuAGCAGCAc- -3'
miRNA:   3'- -UGUcGUUGUCGUCGUUcUCGUCGUug -5'
15674 3' -52.3 NC_004065.1 + 139599 0.67 0.972783
Target:  5'- cGCGGCGAUcGCcguuGGCAaggcgcagaugcGGAGCGGUGGCg -3'
miRNA:   3'- -UGUCGUUGuCG----UCGU------------UCUCGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 139406 0.67 0.969866
Target:  5'- gACGGCccGCGcGCAGCGAGAGUGcGCuGCu -3'
miRNA:   3'- -UGUCGu-UGU-CGUCGUUCUCGU-CGuUG- -5'
15674 3' -52.3 NC_004065.1 + 139036 0.73 0.772954
Target:  5'- cGCAG-AACAGCAGCcAGAGCA-CGGCc -3'
miRNA:   3'- -UGUCgUUGUCGUCGuUCUCGUcGUUG- -5'
15674 3' -52.3 NC_004065.1 + 138546 0.72 0.828075
Target:  5'- cGCGGCAcgaGCGGCGGCGgacuGA-CGGCGACg -3'
miRNA:   3'- -UGUCGU---UGUCGUCGUu---CUcGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 135156 0.68 0.959791
Target:  5'- uGCAGCAcCAcGCugaaGGCGAGuccGUAGCGACa -3'
miRNA:   3'- -UGUCGUuGU-CG----UCGUUCu--CGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 135057 0.68 0.95191
Target:  5'- -aGGCGuacGCGGCAGCcgcGGAGCGggccccGCAGCg -3'
miRNA:   3'- ugUCGU---UGUCGUCGu--UCUCGU------CGUUG- -5'
15674 3' -52.3 NC_004065.1 + 134028 0.69 0.943055
Target:  5'- aAguGCGAUGGCGGCGGaGGCuGCGAUa -3'
miRNA:   3'- -UguCGUUGUCGUCGUUcUCGuCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 133630 0.66 0.989244
Target:  5'- -gAGCGcaaaacACAGCAGCAcuccCAGCAGCa -3'
miRNA:   3'- ugUCGU------UGUCGUCGUucucGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 132140 0.66 0.98243
Target:  5'- gGCGGCGGCGGUGcGCAuc-GCGuGCAACa -3'
miRNA:   3'- -UGUCGUUGUCGU-CGUucuCGU-CGUUG- -5'
15674 3' -52.3 NC_004065.1 + 131947 0.71 0.853208
Target:  5'- gACAGgAACGGguGCAGGcgcaagaucgacAGCAGCAu- -3'
miRNA:   3'- -UGUCgUUGUCguCGUUC------------UCGUCGUug -5'
15674 3' -52.3 NC_004065.1 + 130078 0.7 0.910457
Target:  5'- cGCAGCAGCAGCcGCcgccGCGGCGGu -3'
miRNA:   3'- -UGUCGUUGUCGuCGuucuCGUCGUUg -5'
15674 3' -52.3 NC_004065.1 + 128760 0.83 0.298035
Target:  5'- aGCGGCAGCGGCAGCGuugAGGGCgccgucgccGGCGGCa -3'
miRNA:   3'- -UGUCGUUGUCGUCGU---UCUCG---------UCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 128737 0.85 0.22191
Target:  5'- gGCAGCAGCAGCGGCGcuGGCAGUggUa -3'
miRNA:   3'- -UGUCGUUGUCGUCGUucUCGUCGuuG- -5'
15674 3' -52.3 NC_004065.1 + 128571 0.75 0.692382
Target:  5'- --cGCAGCGGCAGCGAcgucGGCGGCGAa -3'
miRNA:   3'- uguCGUUGUCGUCGUUc---UCGUCGUUg -5'
15674 3' -52.3 NC_004065.1 + 128416 0.76 0.602049
Target:  5'- gGCAGCGGCGGCGGCGccgccaccgagucuGAGC-GCGGCg -3'
miRNA:   3'- -UGUCGUUGUCGUCGUu-------------CUCGuCGUUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.