miRNA display CGI


Results 81 - 100 of 244 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15674 3' -52.3 NC_004065.1 + 128416 0.76 0.602049
Target:  5'- gGCAGCGGCGGCGGCGccgccaccgagucuGAGC-GCGGCg -3'
miRNA:   3'- -UGUCGUUGUCGUCGUu-------------CUCGuCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 128379 0.72 0.836653
Target:  5'- -gGGCuuCGGCGGCGAGAGcCGGCu-- -3'
miRNA:   3'- ugUCGuuGUCGUCGUUCUC-GUCGuug -5'
15674 3' -52.3 NC_004065.1 + 127887 0.77 0.545857
Target:  5'- cGCcGCAGCGGCAGCGcGAGCGGUGcACg -3'
miRNA:   3'- -UGuCGUUGUCGUCGUuCUCGUCGU-UG- -5'
15674 3' -52.3 NC_004065.1 + 127781 0.7 0.904141
Target:  5'- cACGGCGACGG-GGCccauGAGCAGgCGGCa -3'
miRNA:   3'- -UGUCGUUGUCgUCGuu--CUCGUC-GUUG- -5'
15674 3' -52.3 NC_004065.1 + 127658 0.66 0.98243
Target:  5'- gACGGUGACGGCcugggagaGGCGGGAGUccucgaacGGCGAg -3'
miRNA:   3'- -UGUCGUUGUCG--------UCGUUCUCG--------UCGUUg -5'
15674 3' -52.3 NC_004065.1 + 127646 0.68 0.959791
Target:  5'- uGCcGCuGCGGCGcCGAGGGCGGCGGg -3'
miRNA:   3'- -UGuCGuUGUCGUcGUUCUCGUCGUUg -5'
15674 3' -52.3 NC_004065.1 + 127220 0.69 0.93776
Target:  5'- -gAGCGGCGGCcGCGAGGaucgggcGCGGUGGCg -3'
miRNA:   3'- ugUCGUUGUCGuCGUUCU-------CGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 127134 0.74 0.72327
Target:  5'- cGCGGCGGCGGC-GCuaccGGCGGCGGCg -3'
miRNA:   3'- -UGUCGUUGUCGuCGuuc-UCGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 126753 0.66 0.98243
Target:  5'- cGCGGCGcAUGGCGacGCGGGuGCAGCGc- -3'
miRNA:   3'- -UGUCGU-UGUCGU--CGUUCuCGUCGUug -5'
15674 3' -52.3 NC_004065.1 + 126661 0.68 0.95191
Target:  5'- gACGGCGucggcguuCAGCAGCuuGucCAGCAGCg -3'
miRNA:   3'- -UGUCGUu-------GUCGUCGuuCucGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 126560 0.66 0.986156
Target:  5'- -aAGC-ACGGgGGCGcguGGcGCAGCAGCa -3'
miRNA:   3'- ugUCGuUGUCgUCGU---UCuCGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 125377 0.68 0.966733
Target:  5'- -gGGCGACGGCGcGguGGuGCcGGCGGCg -3'
miRNA:   3'- ugUCGUUGUCGU-CguUCuCG-UCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 124959 0.66 0.984377
Target:  5'- cGCGGCAGCGcCuGCAcgaAGGGCGGCcagaGGCg -3'
miRNA:   3'- -UGUCGUUGUcGuCGU---UCUCGUCG----UUG- -5'
15674 3' -52.3 NC_004065.1 + 124810 0.66 0.989245
Target:  5'- gACGGCGAaccaGGCGGCcgAGGAGCuguuccaccuGGUGGCg -3'
miRNA:   3'- -UGUCGUUg---UCGUCG--UUCUCG----------UCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 124523 0.68 0.95597
Target:  5'- cGCAGUAcCAGCGGUgcGA-CGGCGGCu -3'
miRNA:   3'- -UGUCGUuGUCGUCGuuCUcGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 122510 0.76 0.639962
Target:  5'- uCGGUGuCGGC-GCGGGAGCAGCGGCg -3'
miRNA:   3'- uGUCGUuGUCGuCGUUCUCGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 120904 0.68 0.963377
Target:  5'- cGCGGCGACAGCAcccGCAGuccguacuuGuGCGGCGuGCa -3'
miRNA:   3'- -UGUCGUUGUCGU---CGUU---------CuCGUCGU-UG- -5'
15674 3' -52.3 NC_004065.1 + 120555 0.69 0.933201
Target:  5'- cCGGCGGCGGuCGGCGcGAGCgGGCGGg -3'
miRNA:   3'- uGUCGUUGUC-GUCGUuCUCG-UCGUUg -5'
15674 3' -52.3 NC_004065.1 + 119516 0.69 0.946267
Target:  5'- uCAGCAugGGCGGCGcggggacguggucgAGGGCcagGGCGAa -3'
miRNA:   3'- uGUCGUugUCGUCGU--------------UCUCG---UCGUUg -5'
15674 3' -52.3 NC_004065.1 + 118734 0.77 0.566515
Target:  5'- cGCAGCAACAGCGGCAacuaucaccgAGAGC--CAACc -3'
miRNA:   3'- -UGUCGUUGUCGUCGU----------UCUCGucGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.