Results 101 - 120 of 244 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15674 | 3' | -52.3 | NC_004065.1 | + | 115815 | 0.68 | 0.959791 |
Target: 5'- uGCAGCGuCAGgAGCugucucuGAGCGGCcGCc -3' miRNA: 3'- -UGUCGUuGUCgUCGuu-----CUCGUCGuUG- -5' |
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15674 | 3' | -52.3 | NC_004065.1 | + | 115059 | 0.67 | 0.97549 |
Target: 5'- -gGGCAACGGCGcgcGCGAGGacGCGGCcuCg -3' miRNA: 3'- ugUCGUUGUCGU---CGUUCU--CGUCGuuG- -5' |
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15674 | 3' | -52.3 | NC_004065.1 | + | 114700 | 0.69 | 0.938254 |
Target: 5'- uCAGCAGCAGCcccucuacaGGgGAGAGaggaauaGGCGGCg -3' miRNA: 3'- uGUCGUUGUCG---------UCgUUCUCg------UCGUUG- -5' |
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15674 | 3' | -52.3 | NC_004065.1 | + | 113963 | 0.78 | 0.525447 |
Target: 5'- uCGGCGuCGGCGGCGGcAGCGGCGACg -3' miRNA: 3'- uGUCGUuGUCGUCGUUcUCGUCGUUG- -5' |
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15674 | 3' | -52.3 | NC_004065.1 | + | 113767 | 0.71 | 0.876432 |
Target: 5'- gACAGC-GCGGCGGCAGacgaccgacucGGGCGGCuuCu -3' miRNA: 3'- -UGUCGuUGUCGUCGUU-----------CUCGUCGuuG- -5' |
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15674 | 3' | -52.3 | NC_004065.1 | + | 113409 | 0.66 | 0.985986 |
Target: 5'- --cGCGACgucguggccagggAGCuGCGcAGAGCGGCGGCc -3' miRNA: 3'- uguCGUUG-------------UCGuCGU-UCUCGUCGUUG- -5' |
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15674 | 3' | -52.3 | NC_004065.1 | + | 111418 | 0.68 | 0.957527 |
Target: 5'- -aGGCGGCAGUAGgGuucggugaccuuagaGGGGCAGaCGACg -3' miRNA: 3'- ugUCGUUGUCGUCgU---------------UCUCGUC-GUUG- -5' |
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15674 | 3' | -52.3 | NC_004065.1 | + | 110735 | 0.67 | 0.97549 |
Target: 5'- gGCGGCcgucugcuGCAGCAGCAu--GUAGuCGACg -3' miRNA: 3'- -UGUCGu-------UGUCGUCGUucuCGUC-GUUG- -5' |
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15674 | 3' | -52.3 | NC_004065.1 | + | 110166 | 0.69 | 0.935252 |
Target: 5'- gACGGCGGCcGCGGCGgacgagccgGGAccccccgacgcggccGCGGCGACg -3' miRNA: 3'- -UGUCGUUGuCGUCGU---------UCU---------------CGUCGUUG- -5' |
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15674 | 3' | -52.3 | NC_004065.1 | + | 110101 | 0.67 | 0.97389 |
Target: 5'- cCGGCAccuGCGcgauggccccccgccGCAGCAGGA-CGGCGACg -3' miRNA: 3'- uGUCGU---UGU---------------CGUCGUUCUcGUCGUUG- -5' |
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15674 | 3' | -52.3 | NC_004065.1 | + | 109242 | 0.73 | 0.763243 |
Target: 5'- gGCGGCggUAGCGGCGucgguGAcgaugacgacucGCGGCAGCa -3' miRNA: 3'- -UGUCGuuGUCGUCGUu----CU------------CGUCGUUG- -5' |
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15674 | 3' | -52.3 | NC_004065.1 | + | 104980 | 0.66 | 0.98243 |
Target: 5'- -gAGUAACGGCuGaUGAGAGUcGCAACg -3' miRNA: 3'- ugUCGUUGUCGuC-GUUCUCGuCGUUG- -5' |
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15674 | 3' | -52.3 | NC_004065.1 | + | 104876 | 0.66 | 0.984377 |
Target: 5'- uACGGUggaGACGGUAGUAGGAcCAGUAAa -3' miRNA: 3'- -UGUCG---UUGUCGUCGUUCUcGUCGUUg -5' |
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15674 | 3' | -52.3 | NC_004065.1 | + | 103407 | 0.72 | 0.848328 |
Target: 5'- uCGGCAACAuguggaugugaaucuGCAGCAuguucGGCGGCAGCu -3' miRNA: 3'- uGUCGUUGU---------------CGUCGUuc---UCGUCGUUG- -5' |
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15674 | 3' | -52.3 | NC_004065.1 | + | 103299 | 0.66 | 0.989244 |
Target: 5'- -aGGCccGCGGCGGCAGGcuCAGCGGu -3' miRNA: 3'- ugUCGu-UGUCGUCGUUCucGUCGUUg -5' |
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15674 | 3' | -52.3 | NC_004065.1 | + | 100758 | 0.67 | 0.972783 |
Target: 5'- gUAGCcGCGGUAGCuguGGGGCGGgcuCAGCu -3' miRNA: 3'- uGUCGuUGUCGUCGu--UCUCGUC---GUUG- -5' |
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15674 | 3' | -52.3 | NC_004065.1 | + | 100640 | 0.81 | 0.375799 |
Target: 5'- uCGGCGGCAGCGGCGAGAaCAGgGACu -3' miRNA: 3'- uGUCGUUGUCGUCGUUCUcGUCgUUG- -5' |
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15674 | 3' | -52.3 | NC_004065.1 | + | 100283 | 0.73 | 0.772954 |
Target: 5'- cGCGGgGGCGGCGGaCGAGgcgaugcuguacGGCGGCGGCg -3' miRNA: 3'- -UGUCgUUGUCGUC-GUUC------------UCGUCGUUG- -5' |
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15674 | 3' | -52.3 | NC_004065.1 | + | 99724 | 0.69 | 0.927351 |
Target: 5'- gACAGCGACGGCAacuuucugcaaucGCGGGcgaGGCGcGCGAUg -3' miRNA: 3'- -UGUCGUUGUCGU-------------CGUUC---UCGU-CGUUG- -5' |
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15674 | 3' | -52.3 | NC_004065.1 | + | 99421 | 0.78 | 0.51535 |
Target: 5'- aGguGCAGCAGCAGCuGGAgGCGGCcACg -3' miRNA: 3'- -UguCGUUGUCGUCGuUCU-CGUCGuUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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