miRNA display CGI


Results 41 - 60 of 244 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15674 3' -52.3 NC_004065.1 + 62618 0.85 0.22191
Target:  5'- cCGGCGGCAGCAGCcgcGGCAGCAGCa -3'
miRNA:   3'- uGUCGUUGUCGUCGuucUCGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 43598 0.88 0.154648
Target:  5'- gGCGGCAACGGUAGgaaaGAGAGCGGCGGCg -3'
miRNA:   3'- -UGUCGUUGUCGUCg---UUCUCGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 163639 0.9 0.109309
Target:  5'- aGCGGCGGCGGCGGCGGcAGCGGCAGCg -3'
miRNA:   3'- -UGUCGUUGUCGUCGUUcUCGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 71673 0.92 0.087936
Target:  5'- uCAGCAGCAGCAGCGGcGGCGGCAACg -3'
miRNA:   3'- uGUCGUUGUCGUCGUUcUCGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 56717 0.92 0.085562
Target:  5'- cGCAGCGGCGGCGGCGGcGGCAGCAGCu -3'
miRNA:   3'- -UGUCGUUGUCGUCGUUcUCGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 62368 0.81 0.384292
Target:  5'- gACGGCggUGGCGGCGGGGGUGGUGGCg -3'
miRNA:   3'- -UGUCGuuGUCGUCGUUCUCGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 62647 0.8 0.39291
Target:  5'- gACAGCAGCauuGGCGGCgGAGAcgGCAGCGGCg -3'
miRNA:   3'- -UGUCGUUG---UCGUCG-UUCU--CGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 26630 0.76 0.608357
Target:  5'- uGCGGCGACAGCG---GGAGCAGCGu- -3'
miRNA:   3'- -UGUCGUUGUCGUcguUCUCGUCGUug -5'
15674 3' -52.3 NC_004065.1 + 128416 0.76 0.602049
Target:  5'- gGCAGCGGCGGCGGCGccgccaccgagucuGAGC-GCGGCg -3'
miRNA:   3'- -UGUCGUUGUCGUCGUu-------------CUCGuCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 176181 0.76 0.597849
Target:  5'- gAUGGCGACGGCGGCGGaGGCAGCu-- -3'
miRNA:   3'- -UGUCGUUGUCGUCGUUcUCGUCGuug -5'
15674 3' -52.3 NC_004065.1 + 36183 0.77 0.587367
Target:  5'- -aAGCGACGGCAGCAGGAauggugGCGGUuACa -3'
miRNA:   3'- ugUCGUUGUCGUCGUUCU------CGUCGuUG- -5'
15674 3' -52.3 NC_004065.1 + 166456 0.77 0.587367
Target:  5'- aGCAGCAcgagcACGGaCAGCAcGGGCGGUGACa -3'
miRNA:   3'- -UGUCGU-----UGUC-GUCGUuCUCGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 224268 0.77 0.556158
Target:  5'- -aAGCAACAGCuGC-GGAGCAGCGcuaGCg -3'
miRNA:   3'- ugUCGUUGUCGuCGuUCUCGUCGU---UG- -5'
15674 3' -52.3 NC_004065.1 + 99404 0.78 0.535618
Target:  5'- gACAGguGCGcucGCAGCAGGGGCccgAGCGGCa -3'
miRNA:   3'- -UGUCguUGU---CGUCGUUCUCG---UCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 64532 0.78 0.535618
Target:  5'- cGCAGCAGCuGCGGCGcGA-CGGCGACa -3'
miRNA:   3'- -UGUCGUUGuCGUCGUuCUcGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 24528 0.79 0.466155
Target:  5'- gAUGGCGGCGGCAGCGAcGA-CGGCAGCg -3'
miRNA:   3'- -UGUCGUUGUCGUCGUU-CUcGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 151117 0.8 0.419506
Target:  5'- gACGaCGGCAGCAGCGAaGGCGGCGGCa -3'
miRNA:   3'- -UGUcGUUGUCGUCGUUcUCGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 62088 0.8 0.419506
Target:  5'- -gGGCGACGGCAGC---GGCAGCGGCg -3'
miRNA:   3'- ugUCGUUGUCGUCGuucUCGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 75784 0.8 0.401653
Target:  5'- gGCGGCGGuCGGCgAGgGGGAGCGGCGGCg -3'
miRNA:   3'- -UGUCGUU-GUCG-UCgUUCUCGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 35624 0.8 0.401653
Target:  5'- gGCGGCGGCGGCGGCGGGGaugucauCGGCGACa -3'
miRNA:   3'- -UGUCGUUGUCGUCGUUCUc------GUCGUUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.