miRNA display CGI


Results 81 - 100 of 244 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15674 3' -52.3 NC_004065.1 + 56512 0.73 0.771988
Target:  5'- uGCGGCGACGGaC-GCGAGAuuucuucagagugGCGGCGACa -3'
miRNA:   3'- -UGUCGUUGUC-GuCGUUCU-------------CGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 68579 0.73 0.78253
Target:  5'- aGCAacGCGGCGGCGGCGauccAGAGCGcCGACa -3'
miRNA:   3'- -UGU--CGUUGUCGUCGU----UCUCGUcGUUG- -5'
15674 3' -52.3 NC_004065.1 + 61518 0.73 0.791963
Target:  5'- cGCGGCGACAGCAucccGCAGGcgaucGCAGUcGCg -3'
miRNA:   3'- -UGUCGUUGUCGU----CGUUCu----CGUCGuUG- -5'
15674 3' -52.3 NC_004065.1 + 11310 0.73 0.801244
Target:  5'- uCAGCGucgccACAGaCAGCAAGuAGCGGCAc- -3'
miRNA:   3'- uGUCGU-----UGUC-GUCGUUC-UCGUCGUug -5'
15674 3' -52.3 NC_004065.1 + 38444 0.73 0.801244
Target:  5'- gACGGCGGCAGgaggcucauCGGCAcacuggugguGGGCAGCGACa -3'
miRNA:   3'- -UGUCGUUGUC---------GUCGUu---------CUCGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 148638 0.73 0.801244
Target:  5'- gACAGCGGCAGCgacucgauGGCGAacAGCAGCAuGCa -3'
miRNA:   3'- -UGUCGUUGUCG--------UCGUUc-UCGUCGU-UG- -5'
15674 3' -52.3 NC_004065.1 + 45538 0.73 0.801244
Target:  5'- cCGGCGccGCGGCGGCGGcGGCAGCcGCc -3'
miRNA:   3'- uGUCGU--UGUCGUCGUUcUCGUCGuUG- -5'
15674 3' -52.3 NC_004065.1 + 24719 0.74 0.733413
Target:  5'- --cGUGACAGCAGagAAGAGCGGCGAg -3'
miRNA:   3'- uguCGUUGUCGUCg-UUCUCGUCGUUg -5'
15674 3' -52.3 NC_004065.1 + 127134 0.74 0.72327
Target:  5'- cGCGGCGGCGGC-GCuaccGGCGGCGGCg -3'
miRNA:   3'- -UGUCGUUGUCGuCGuuc-UCGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 48104 0.74 0.72327
Target:  5'- -uGGCGGCGGCGGU---GGCGGCGGCg -3'
miRNA:   3'- ugUCGUUGUCGUCGuucUCGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 128416 0.76 0.602049
Target:  5'- gGCAGCGGCGGCGGCGccgccaccgagucuGAGC-GCGGCg -3'
miRNA:   3'- -UGUCGUUGUCGUCGUu-------------CUCGuCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 26630 0.76 0.608357
Target:  5'- uGCGGCGACAGCG---GGAGCAGCGu- -3'
miRNA:   3'- -UGUCGUUGUCGUcguUCUCGUCGUug -5'
15674 3' -52.3 NC_004065.1 + 140184 0.76 0.608357
Target:  5'- aACAaCAACAGCGGCAGuAGCAGCAc- -3'
miRNA:   3'- -UGUcGUUGUCGUCGUUcUCGUCGUug -5'
15674 3' -52.3 NC_004065.1 + 62476 0.75 0.661013
Target:  5'- gACGGCAGgAGCGGCcgcGGCGGUAGCg -3'
miRNA:   3'- -UGUCGUUgUCGUCGuucUCGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 152304 0.75 0.661013
Target:  5'- uGCGGCGGCGGCGGUGccGGCGGgGACg -3'
miRNA:   3'- -UGUCGUUGUCGUCGUucUCGUCgUUG- -5'
15674 3' -52.3 NC_004065.1 + 44845 0.75 0.681966
Target:  5'- gACAGCGACAcgGGCcGGAGCAGCGu- -3'
miRNA:   3'- -UGUCGUUGUcgUCGuUCUCGUCGUug -5'
15674 3' -52.3 NC_004065.1 + 97945 0.75 0.691342
Target:  5'- cCGGCGGCAGCGcgucgaagugcuuGCGgaAGAGCAGCAGa -3'
miRNA:   3'- uGUCGUUGUCGU-------------CGU--UCUCGUCGUUg -5'
15674 3' -52.3 NC_004065.1 + 29976 0.75 0.692382
Target:  5'- -uGGCGGCGGCGGCGGcGGCAGUggUa -3'
miRNA:   3'- ugUCGUUGUCGUCGUUcUCGUCGuuG- -5'
15674 3' -52.3 NC_004065.1 + 128571 0.75 0.692382
Target:  5'- --cGCAGCGGCAGCGAcgucGGCGGCGAa -3'
miRNA:   3'- uguCGUUGUCGUCGUUc---UCGUCGUUg -5'
15674 3' -52.3 NC_004065.1 + 77814 0.72 0.828075
Target:  5'- --uGCAGCAGCuGCGGGAGC-GCAu- -3'
miRNA:   3'- uguCGUUGUCGuCGUUCUCGuCGUug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.