miRNA display CGI


Results 121 - 140 of 244 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15674 3' -52.3 NC_004065.1 + 163671 0.72 0.845033
Target:  5'- cACAGCGGCcucaguacaaAGCAGaAGGAGC-GCAGCa -3'
miRNA:   3'- -UGUCGUUG----------UCGUCgUUCUCGuCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 201171 0.72 0.840029
Target:  5'- cGCAGCAGCgccgacaccaAGCGGCGcgucccggcucgggcGGcGCGGCGACg -3'
miRNA:   3'- -UGUCGUUG----------UCGUCGU---------------UCuCGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 128379 0.72 0.836653
Target:  5'- -gGGCuuCGGCGGCGAGAGcCGGCu-- -3'
miRNA:   3'- ugUCGuuGUCGUCGUUCUC-GUCGuug -5'
15674 3' -52.3 NC_004065.1 + 48104 0.74 0.72327
Target:  5'- -uGGCGGCGGCGGU---GGCGGCGGCg -3'
miRNA:   3'- ugUCGUUGUCGUCGuucUCGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 127134 0.74 0.72327
Target:  5'- cGCGGCGGCGGC-GCuaccGGCGGCGGCg -3'
miRNA:   3'- -UGUCGUUGUCGuCGuuc-UCGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 24719 0.74 0.733413
Target:  5'- --cGUGACAGCAGagAAGAGCGGCGAg -3'
miRNA:   3'- uguCGUUGUCGUCg-UUCUCGUCGUUg -5'
15674 3' -52.3 NC_004065.1 + 26420 0.74 0.733413
Target:  5'- cACGGCGGCGGCGGCcuccGAGAGCA-CAuACa -3'
miRNA:   3'- -UGUCGUUGUCGUCG----UUCUCGUcGU-UG- -5'
15674 3' -52.3 NC_004065.1 + 24861 0.73 0.75341
Target:  5'- gGCGGCGACGGCGGCcucGAcGGUGGCAAa -3'
miRNA:   3'- -UGUCGUUGUCGUCG---UUcUCGUCGUUg -5'
15674 3' -52.3 NC_004065.1 + 109242 0.73 0.763243
Target:  5'- gGCGGCggUAGCGGCGucgguGAcgaugacgacucGCGGCAGCa -3'
miRNA:   3'- -UGUCGuuGUCGUCGUu----CU------------CGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 56512 0.73 0.771988
Target:  5'- uGCGGCGACGGaC-GCGAGAuuucuucagagugGCGGCGACa -3'
miRNA:   3'- -UGUCGUUGUC-GuCGUUCU-------------CGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 68579 0.73 0.78253
Target:  5'- aGCAacGCGGCGGCGGCGauccAGAGCGcCGACa -3'
miRNA:   3'- -UGU--CGUUGUCGUCGU----UCUCGUcGUUG- -5'
15674 3' -52.3 NC_004065.1 + 61518 0.73 0.791963
Target:  5'- cGCGGCGACAGCAucccGCAGGcgaucGCAGUcGCg -3'
miRNA:   3'- -UGUCGUUGUCGU----CGUUCu----CGUCGuUG- -5'
15674 3' -52.3 NC_004065.1 + 138546 0.72 0.828075
Target:  5'- cGCGGCAcgaGCGGCGGCGgacuGA-CGGCGACg -3'
miRNA:   3'- -UGUCGU---UGUCGUCGUu---CUcGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 77814 0.72 0.828075
Target:  5'- --uGCAGCAGCuGCGGGAGC-GCAu- -3'
miRNA:   3'- uguCGUUGUCGuCGUUCUCGuCGUug -5'
15674 3' -52.3 NC_004065.1 + 45538 0.73 0.801244
Target:  5'- cCGGCGccGCGGCGGCGGcGGCAGCcGCc -3'
miRNA:   3'- uGUCGU--UGUCGUCGUUcUCGUCGuUG- -5'
15674 3' -52.3 NC_004065.1 + 148638 0.73 0.801244
Target:  5'- gACAGCGGCAGCgacucgauGGCGAacAGCAGCAuGCa -3'
miRNA:   3'- -UGUCGUUGUCG--------UCGUUc-UCGUCGU-UG- -5'
15674 3' -52.3 NC_004065.1 + 38444 0.73 0.801244
Target:  5'- gACGGCGGCAGgaggcucauCGGCAcacuggugguGGGCAGCGACa -3'
miRNA:   3'- -UGUCGUUGUC---------GUCGUu---------CUCGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 11310 0.73 0.801244
Target:  5'- uCAGCGucgccACAGaCAGCAAGuAGCGGCAc- -3'
miRNA:   3'- uGUCGU-----UGUC-GUCGUUC-UCGUCGUug -5'
15674 3' -52.3 NC_004065.1 + 28017 0.66 0.989245
Target:  5'- gACGGCGGC-GCAGCGucucGAugcGCGGCGGg -3'
miRNA:   3'- -UGUCGUUGuCGUCGUu---CU---CGUCGUUg -5'
15674 3' -52.3 NC_004065.1 + 149475 1.04 0.013795
Target:  5'- gGCGGCGGCGGCAGCGGGAGCAGCGACa -3'
miRNA:   3'- -UGUCGUUGUCGUCGUUCUCGUCGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.