miRNA display CGI


Results 21 - 40 of 244 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15674 3' -52.3 NC_004065.1 + 118734 0.77 0.566515
Target:  5'- cGCAGCAACAGCGGCAacuaucaccgAGAGC--CAACc -3'
miRNA:   3'- -UGUCGUUGUCGUCGU----------UCUCGucGUUG- -5'
15674 3' -52.3 NC_004065.1 + 62864 0.77 0.545857
Target:  5'- cGCGGCuGCuGCcgccGGCGGGGGCGGCGGCg -3'
miRNA:   3'- -UGUCGuUGuCG----UCGUUCUCGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 97222 0.78 0.485556
Target:  5'- gACGGcCGGC-GCAGCAGGcGCGGCAGCa -3'
miRNA:   3'- -UGUC-GUUGuCGUCGUUCuCGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 52223 0.87 0.1673
Target:  5'- aACAGCAggaacaACAGCAGCAGGAGaAGCAACa -3'
miRNA:   3'- -UGUCGU------UGUCGUCGUUCUCgUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 6432 0.74 0.733413
Target:  5'- cAUAGCAccgACAGCgAGCcAGAGUAGCGAg -3'
miRNA:   3'- -UGUCGU---UGUCG-UCGuUCUCGUCGUUg -5'
15674 3' -52.3 NC_004065.1 + 122510 0.76 0.639962
Target:  5'- uCGGUGuCGGC-GCGGGAGCAGCGGCg -3'
miRNA:   3'- uGUCGUuGUCGuCGUUCUCGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 24852 0.78 0.525447
Target:  5'- aACAcCGGCGGCGGCGGuGGCGGCGACg -3'
miRNA:   3'- -UGUcGUUGUCGUCGUUcUCGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 97258 0.9 0.115369
Target:  5'- aGCAGCAGCGGCAGC-AGAcgucGCAGCAGCg -3'
miRNA:   3'- -UGUCGUUGUCGUCGuUCU----CGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 226605 0.76 0.629422
Target:  5'- uCAGCAACAGCAGaagAAGuGGUGGCAACc -3'
miRNA:   3'- uGUCGUUGUCGUCg--UUC-UCGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 149475 1.04 0.013795
Target:  5'- gGCGGCGGCGGCAGCGGGAGCAGCGACa -3'
miRNA:   3'- -UGUCGUUGUCGUCGUUCUCGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 127887 0.77 0.545857
Target:  5'- cGCcGCAGCGGCAGCGcGAGCGGUGcACg -3'
miRNA:   3'- -UGuCGUUGUCGUCGUuCUCGUCGU-UG- -5'
15674 3' -52.3 NC_004065.1 + 20254 0.76 0.5968
Target:  5'- uCAGCAACAGCAGUcgcGGAcgcacacGCAGCAGCn -3'
miRNA:   3'- uGUCGUUGUCGUCGu--UCU-------CGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 99421 0.78 0.51535
Target:  5'- aGguGCAGCAGCAGCuGGAgGCGGCcACg -3'
miRNA:   3'- -UguCGUUGUCGUCGuUCU-CGUCGuUG- -5'
15674 3' -52.3 NC_004065.1 + 45462 0.78 0.505332
Target:  5'- aACGGUGGCGGUGGCGGcAGCGGCGGCg -3'
miRNA:   3'- -UGUCGUUGUCGUCGUUcUCGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 19236 0.82 0.330631
Target:  5'- gACAGCAgggacaGCAGCAGCAcagccaccacacccaGGuGCAGCAGCa -3'
miRNA:   3'- -UGUCGU------UGUCGUCGU---------------UCuCGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 36636 0.87 0.17172
Target:  5'- -uGGCGGCGGCAGCGAGAGCgacgauAGCGACg -3'
miRNA:   3'- ugUCGUUGUCGUCGUUCUCG------UCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 68591 0.73 0.78253
Target:  5'- gGCAGCugcuGCAGCAGCucccGCAGCcACg -3'
miRNA:   3'- -UGUCGu---UGUCGUCGuucuCGUCGuUG- -5'
15674 3' -52.3 NC_004065.1 + 88676 0.73 0.763244
Target:  5'- --cGCGACGGCGGCGGGcuccgcugccGGCGGUGGCg -3'
miRNA:   3'- uguCGUUGUCGUCGUUC----------UCGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 97953 0.75 0.681966
Target:  5'- gACAGCccgGGCGGCGGC---GGCAGCGACc -3'
miRNA:   3'- -UGUCG---UUGUCGUCGuucUCGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 76654 0.75 0.661014
Target:  5'- gGCGGCGccacucggACGGCGGCGAGcucauccGCGGCGGCg -3'
miRNA:   3'- -UGUCGU--------UGUCGUCGUUCu------CGUCGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.