Results 41 - 60 of 244 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15674 | 3' | -52.3 | NC_004065.1 | + | 90420 | 0.74 | 0.733413 |
Target: 5'- gACGGCGGaGGCGGC-GGAGCcGGCGGCa -3' miRNA: 3'- -UGUCGUUgUCGUCGuUCUCG-UCGUUG- -5' |
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15674 | 3' | -52.3 | NC_004065.1 | + | 24852 | 0.78 | 0.525447 |
Target: 5'- aACAcCGGCGGCGGCGGuGGCGGCGACg -3' miRNA: 3'- -UGUcGUUGUCGUCGUUcUCGUCGUUG- -5' |
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15674 | 3' | -52.3 | NC_004065.1 | + | 97258 | 0.9 | 0.115369 |
Target: 5'- aGCAGCAGCGGCAGC-AGAcgucGCAGCAGCg -3' miRNA: 3'- -UGUCGUUGUCGUCGuUCU----CGUCGUUG- -5' |
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15674 | 3' | -52.3 | NC_004065.1 | + | 24669 | 0.74 | 0.712017 |
Target: 5'- uCGGCAGCAGCGGCAAGAucuacaucuaccuGCuucucacgcGCAGCg -3' miRNA: 3'- uGUCGUUGUCGUCGUUCU-------------CGu--------CGUUG- -5' |
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15674 | 3' | -52.3 | NC_004065.1 | + | 149475 | 1.04 | 0.013795 |
Target: 5'- gGCGGCGGCGGCAGCGGGAGCAGCGACa -3' miRNA: 3'- -UGUCGUUGUCGUCGUUCUCGUCGUUG- -5' |
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15674 | 3' | -52.3 | NC_004065.1 | + | 34620 | 0.7 | 0.890769 |
Target: 5'- cCGGCAGCcgAGCGGCGgAGGGUGGCGu- -3' miRNA: 3'- uGUCGUUG--UCGUCGU-UCUCGUCGUug -5' |
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15674 | 3' | -52.3 | NC_004065.1 | + | 36636 | 0.87 | 0.17172 |
Target: 5'- -uGGCGGCGGCAGCGAGAGCgacgauAGCGACg -3' miRNA: 3'- ugUCGUUGUCGUCGUUCUCG------UCGUUG- -5' |
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15674 | 3' | -52.3 | NC_004065.1 | + | 23132 | 0.71 | 0.876432 |
Target: 5'- gGCuGCGACAGCAGCGu--GCuGCGAa -3' miRNA: 3'- -UGuCGUUGUCGUCGUucuCGuCGUUg -5' |
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15674 | 3' | -52.3 | NC_004065.1 | + | 190123 | 0.71 | 0.868914 |
Target: 5'- cGCuGcCGACGGCAGCAAaccccucGCGGCGACg -3' miRNA: 3'- -UGuC-GUUGUCGUCGUUcu-----CGUCGUUG- -5' |
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15674 | 3' | -52.3 | NC_004065.1 | + | 178816 | 0.71 | 0.853208 |
Target: 5'- cACAGCAGCAGCucuGGUggGucuacuAGUAGUAGCc -3' miRNA: 3'- -UGUCGUUGUCG---UCGuuC------UCGUCGUUG- -5' |
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15674 | 3' | -52.3 | NC_004065.1 | + | 195675 | 0.72 | 0.819309 |
Target: 5'- gACGGCGAC-GCGGCGGGAGC-GUAc- -3' miRNA: 3'- -UGUCGUUGuCGUCGUUCUCGuCGUug -5' |
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15674 | 3' | -52.3 | NC_004065.1 | + | 68591 | 0.73 | 0.78253 |
Target: 5'- gGCAGCugcuGCAGCAGCucccGCAGCcACg -3' miRNA: 3'- -UGUCGu---UGUCGUCGuucuCGUCGuUG- -5' |
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15674 | 3' | -52.3 | NC_004065.1 | + | 88676 | 0.73 | 0.763244 |
Target: 5'- --cGCGACGGCGGCGGGcuccgcugccGGCGGUGGCg -3' miRNA: 3'- uguCGUUGUCGUCGUUC----------UCGUCGUUG- -5' |
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15674 | 3' | -52.3 | NC_004065.1 | + | 225900 | 0.75 | 0.675696 |
Target: 5'- gACGGCGGCGGCGGgAgccggagugcuguucGGAGCGGUGGCc -3' miRNA: 3'- -UGUCGUUGUCGUCgU---------------UCUCGUCGUUG- -5' |
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15674 | 3' | -52.3 | NC_004065.1 | + | 226605 | 0.76 | 0.629422 |
Target: 5'- uCAGCAACAGCAGaagAAGuGGUGGCAACc -3' miRNA: 3'- uGUCGUUGUCGUCg--UUC-UCGUCGUUG- -5' |
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15674 | 3' | -52.3 | NC_004065.1 | + | 118734 | 0.77 | 0.566515 |
Target: 5'- cGCAGCAACAGCGGCAacuaucaccgAGAGC--CAACc -3' miRNA: 3'- -UGUCGUUGUCGUCGU----------UCUCGucGUUG- -5' |
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15674 | 3' | -52.3 | NC_004065.1 | + | 62864 | 0.77 | 0.545857 |
Target: 5'- cGCGGCuGCuGCcgccGGCGGGGGCGGCGGCg -3' miRNA: 3'- -UGUCGuUGuCG----UCGUUCUCGUCGUUG- -5' |
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15674 | 3' | -52.3 | NC_004065.1 | + | 99421 | 0.78 | 0.51535 |
Target: 5'- aGguGCAGCAGCAGCuGGAgGCGGCcACg -3' miRNA: 3'- -UguCGUUGUCGUCGuUCU-CGUCGuUG- -5' |
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15674 | 3' | -52.3 | NC_004065.1 | + | 45462 | 0.78 | 0.505332 |
Target: 5'- aACGGUGGCGGUGGCGGcAGCGGCGGCg -3' miRNA: 3'- -UGUCGUUGUCGUCGUUcUCGUCGUUG- -5' |
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15674 | 3' | -52.3 | NC_004065.1 | + | 19236 | 0.82 | 0.330631 |
Target: 5'- gACAGCAgggacaGCAGCAGCAcagccaccacacccaGGuGCAGCAGCa -3' miRNA: 3'- -UGUCGU------UGUCGUCGU---------------UCuCGUCGUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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